Pare002823.1
Basic Information
- Insect
- Pseudoatta argentina
- Gene Symbol
- lov
- Assembly
- GCA_017607525.1
- Location
- JAANIA010001848.1:2863851-2868241[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.8e-16 5.6e-13 47.5 0.0 1 44 544 587 544 588 0.95
Sequence Information
- Coding Sequence
- ATGTCGAGCGTCGGGGACAGTCCTGACAGAATGGCTCTGCAATCGCACTATTCCTTACGATGGCACAATCATCTCACCCACATACAACGGGCGTTCGAGGAGTTGTTGCAAGCCGAGATGCTCGTCGACGTGACCCTGATCTGCGCTGACAGCAGCGTCAAGGCACACAAAGTTGTCCTTAGCGCCTGCAGTCCTTTCTTCGAGAGGATATTCGCTGAAAATCCGTGCAAGCACCCCGTGATCGTGCTGAAGGACTTCTCGCATCATGAATTGTCCACTTTGGTGCACTTTATATATCGTGGTGAGGTGCAAATCGCTCAGGAGGAATTACCGGGGCTGATGAAGGCCGCAGAGTGTCTGCAGGTACGTGGATTGTCGTCATCGGAGCCGAGGCCGGTGTCGACGGAACCCAGGCCGTTGTCGTTGGCGTCAACGCCGACGCGCGATCTCATTCTGGCTGGATCACCAACACCAGAAGTCGCACGACACGGCACACCGGAAGATGATGAAAACGCGTTGGAGAGTACAGCGGAGATGAAACCTATCCTGCTTCCACCAACGAGGGACCATCAGGCCAAGTCGCACATTGGCCACATGAACTTTGGTATCCGCGAGAGTTGCGGCTCGCCGTCAATGCCACGTCGGAAACAGGCGCGTCCGCGCCGACGATCCGGCGAATTGCTACCGCAAGATCTGAGCAGACGCTCGACCCCACCGGTCAGTTCGAGTCCATTAACGAGCGTTCTTAATCTCAGCGGTCAACACCAGgcgcagcagcagcaacagcagcagcagcagcagcagctaCTATTGCATCAATCTCAATATCATCAACAACAATCGATTAACAACGTACAGAatcagcagcagcagcagcagcagcagcagcagcaagaAGACATGGCGGAGAATCTCTCGATGAAGAAACCTATATCGCCGAGCGTATTAGATCAGCATCATGTGAAGACGGAAGGCAGTGAAGCGACGAGCAGTCCTCGCGGCTCGCCGCTCACTGGAACGAGTCTACTACATCATCCGGATCCTGTATCAGACATCCCGGCGGCTGTAGCAGCAGCTGTAGCGGCAACTGTAGCATTGTCGCTACCGACAATGCCGACGTTGTCACTGTCGCAACCGCATCCTCCCGAGTACCTGACAAGCCTCAGCCAATGGCTGCCCGGGCATCCTCAAAGTCaactgccgccgccgccgccggcTCAAAGTCACCATCCACGCGAAGACAGTCCGCATGGTTCCAGCAGATCTCATCCGTATCAACATCAGCAGCAACAAGAATCAGCTTTGCCGCGACGTAGCGCTATGGCGATGTTTACACCGACATTAGACGGTGTGACAGCTCTAGGTGGCGGACTTTTCTCGCATCACGCTACCACATATGACAGAGGTATCCTCGCGGATTCGCTGCTTACGGATAATTTCAAGCCAGAAGCGCTCCAAAATCTCTTTGGTACTCCCAGTCTCGGTCCTGCGCCCgctaaaaaaacaaaaaagcatCGTAATGATAGTGACACGCCACGTAGATGGACCGATCACAACACTCGAGCTCTCGCGGTTAATAGGCCCAAAGGGCAACACAGCGCTCCGCGAGGTGGACCACCACGATCCTGGACGAATAACGAACTTACATTAGCTCTGCAACATGTTTGGGAAAAAAAGCTGACCACGTCGCAGGCTAGTCGTATGTTTGGTATTCCCTATAATAGCTTGCTAATGTATGTGCGTGGTAAATACGGGAAGAGTCTAAAGCTTGAGCAATTACGTAGGACTTGTACCGGCACCAATAACTCTGAAATCATGAATAACAATAACATCAAGCCCGTCCAGCAGTCCGCGCAGATGAGCCACGGGCTCACCGGTCTGCCGCTGCAGCATCCGGGGGACAACAGCGGCTATCCCCATCGCGGTCTACTCGGCGGCAGCATGCCGCAGCCGCAGGGCTACTATCCCGCCGATTATGCCACCGCCGAGACACCATCCCCCATCGTTGACCACCATCATCACCAGGAGTCGTCGATGCAGTCGCAACCAGCGCAATCGACGCCCGCGTTGCTACAGCAGAACGGTTCTGAT
- Protein Sequence
- MSSVGDSPDRMALQSHYSLRWHNHLTHIQRAFEELLQAEMLVDVTLICADSSVKAHKVVLSACSPFFERIFAENPCKHPVIVLKDFSHHELSTLVHFIYRGEVQIAQEELPGLMKAAECLQVRGLSSSEPRPVSTEPRPLSLASTPTRDLILAGSPTPEVARHGTPEDDENALESTAEMKPILLPPTRDHQAKSHIGHMNFGIRESCGSPSMPRRKQARPRRRSGELLPQDLSRRSTPPVSSSPLTSVLNLSGQHQAQQQQQQQQQQQLLLHQSQYHQQQSINNVQNQQQQQQQQQQQEDMAENLSMKKPISPSVLDQHHVKTEGSEATSSPRGSPLTGTSLLHHPDPVSDIPAAVAAAVAATVALSLPTMPTLSLSQPHPPEYLTSLSQWLPGHPQSQLPPPPPAQSHHPREDSPHGSSRSHPYQHQQQQESALPRRSAMAMFTPTLDGVTALGGGLFSHHATTYDRGILADSLLTDNFKPEALQNLFGTPSLGPAPAKKTKKHRNDSDTPRRWTDHNTRALAVNRPKGQHSAPRGGPPRSWTNNELTLALQHVWEKKLTTSQASRMFGIPYNSLLMYVRGKYGKSLKLEQLRRTCTGTNNSEIMNNNNIKPVQQSAQMSHGLTGLPLQHPGDNSGYPHRGLLGGSMPQPQGYYPADYATAETPSPIVDHHHHQESSMQSQPAQSTPALLQQNGSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01477024;
- 90% Identity
- iTF_01261924; iTF_00016779; iTF_00016609; iTF_01476363; iTF_01476097; iTF_00014646; iTF_00014832; iTF_00015480; iTF_00015302; iTF_00015966; iTF_00016133;
- 80% Identity
- iTF_01261924;