Basic Information

Insect: Trachymyrmex cornetzi
Gene Symbol: bab2
Assembly: GCA_001594075.1
Location: NW:312695-347461[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 6.9e-13 6.8e-10 37.9 0.0 1 39 391 430 391 434 0.90

2 4 4.2e-13 4.2e-10 38.6 0.1 2 39 446 483 445 486 0.94

3 4 1.6e-18 1.6e-15 56.0 0.0 1 45 500 545 500 545 0.96

4 4 1.1e-18 1.1e-15 56.5 0.1 1 42 552 594 552 595 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	6.9e-13	6.8e-10	37.9	0.0	1	39	391	430	391	434	0.90
2	4	4.2e-13	4.2e-10	38.6	0.1	2	39	446	483	445	486	0.94
3	4	1.6e-18	1.6e-15	56.0	0.0	1	45	500	545	500	545	0.96
4	4	1.1e-18	1.1e-15	56.5	0.1	1	42	552	594	552	595	0.97

Sequence Information

Coding Sequence: ATGGAGACAGATCGTTATTGGGGCGTGCACTACAGCGGCGGCATGGCCGGGCAGCACTACTGCCTGCGTTGGAACAACTACCAATCGAATATGACGTCGGTGATGCACCAGCTCCTGCAGACCGAGGCCTTCGTCGACGTCACCCTGGCGTGCAACGAGGCCTCGTTAAAGGCGCACAAGGTGGTGTTGTCGGCTTGCAGCTCCTATTTCCAGAAGCTCCTGCTATCGAATCCCTGCAAACACCCGACGATCATCATGCCGCAGGACGTCTGCTTCAACGACCTCAAGTTCATCATCGAGTTCGTCTACCGCGGCGAGATCGACGTTTCGCAAGCGGAGCTTCAGTCGCTCTTGAAGACGGCCGACCAGCTAAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAACAGGGACGGTCCGCCACCCGTGAGTCTGAGCTCGCCGCCGAGAGAGTCCGGCACCCCGAGGTTGAACTATACGAAGCTGAAGAAGCACCATCAGAGATACAAGAGACCCAGAATCGAGCGGCCCACATTCGAGTCGCGTCCTACCGATCCGAGACACTACGATCGCTACAAAGAAGAAGAGGCTAACGATTACAGCCGTGACAACAAAGAGAACCATCGGGACTGGCAGGCTGAAGATGAAGAGTGCACGGagacagcaacagcagcagtaGCATTGGAAACTTGccaacgtaataataataacaataacaacaacaacgGTAACGGCACGAGTAACAATAGTGACATGTTCTGTCACACAGGGCTAGGGCATTATGGCCACCATCCGGATCCCGGAGAGGTCGATTTGCCCCCCGAGACTCAACCCACCCCACCCAGCGCCACCCTGGTCGGCACTACCATCACCCACTTGAGGGATCCGGATCATCATTCTACAGAGATTCAGAATTGCGACAGCGTCAAGATCAAGTTCGAAACGCTGCACACGATGGACTCCTCGGACACGATCGACATAGATAGCCACATGTCGGATCGGGCGAGCGTAAGCTCGAAAAATGCCGCCGACAGCGACAACATGATGATGATAACACCGGAGCTATTGGGACTGATGCCATCGGGAAGCTCCGGTCAGTCAGACTCGGGTGAGAATAACTCTAGGGGGCACAGCGGACAGTCCAGCTCGCACCATCACGGTTCGAAGTCGTGGACGCAGGAGGATATGGACGCGGCTTTAGAAGCGCTAAGGAATCACAACATGAGCTTGACAAAAGCTTCGGcaacattCGGTATTCCCTCAACGACACTATGGCAACGAGCGCATCGATTGGGCATCGACACACCGAAAAAAGACGGCCCCACGAAATCCTGGAGCGACGAGAGTTTGAACAATGCCTTAGAAGCGTTGCGTACCGGTTCCATTTCGGCTAACAAGGCGTCCAAAGCATATGGCATACCTTCTAGCACGTTGTATAAGATCGCCAGGAGGGAAGGTATCAGATTAGCCGCACCGTTCAACGCGAGTCCCACTACATGGACACCCTCCGATCTGGATCGCGCTTTAGAAGCAATAAGATCTGGTCAGACGTCCGTACAGAGAGCGTCAACGGAATTCGGTATACCTACGGGGACTCTTTACGGAAGATGCAAGCGGGAAGGAATCGAGCTTAGTAGAAGCAATCCTACGCCATGGAGCGAAGATGCTATGACTGAAGCTCTCGAGGCCGTCAGATTAGGACACATGAGCATAAATCAAGCGGCAATCCATTATAATCTGCCGTATTCGTCACTATACGGACGCTTCAAGAGGGGCAAATACGAGGAACCCGTCGTCGGTGATATCTCGCAGGATGGTACCAGTCCACATTTCCATCAGAGCCCTAACCAGAATCACTCATCCGCCCTTCCAGATCAAATGCCTTATCCGGGCAGTTGA
Protein Sequence: METDRYWGVHYSGGMAGQHYCLRWNNYQSNMTSVMHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRPRIERPTFESRPTDPRHYDRYKEEEANDYSRDNKENHRDWQAEDEECTETATAAVALETCQRNNNNNNNNNGNGTSNNSDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNASPTTWTPSDLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGTSPHFHQSPNQNHSSALPDQMPYPGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_01520386;
80% Identity: iTF_01476350;