Basic Information

Insect: Trachymyrmex cornetzi
Gene Symbol: RFX7
Assembly: GCA_001594075.1
Location: NW:640042-651791[+]

Transcription Factor Domain

TF Family: RFX
Domain: RFX domain
PFAM: PF02257
TF Group: Basic Domians group
Description: RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 7.2e-33 4.3e-29 100.4 0.1 3 78 177 252 175 253 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	7.2e-33	4.3e-29	100.4	0.1	3	78	177	252	175	253	0.97

Sequence Information

Coding Sequence: ATGAGTACTGACAGTCATGATGAGACGAAATCCTGCAAAACATCCGCGAGGAGCGAAGAGGAGAACGCATTTGACGTTAAACGAATTAAAAAGGAGCGCAGTGACATTTGTGTGGAAAATGGTGACACTGCTAGCATTACCGCCGCCACCTCTACCTCCTCAGTCACCGTTGCTACTGCTGCCACCACCGTCCTCGAGAAACGACAGCCACCGGCCGGCAGATTCGCCTCAAATGGTTTTCACGGAGATGGCGATCAGCTGCAGGACTTGGTTGCGACCAAATTCGCTACCTTGGCCAACCATGGTGCTTCTTCCAAGCAGGACAAGATTCGGATTATGATAGAGGATGGCATTAGcgAAGAATCTAGAGCGCTTGTGGATAAAATCTTCTCGCAGGTGGAACAACTTAAAATAGAAGAAAAGTTATTGTTGTACCTGAAACTTCCGTTATTGCTGACAAATCCAAGTGGGACCGTCGATCCACTGAGGCAACCGCTAAATCCATTAGGAAATCGTTACGAAATTCATCAGACCATTATGTGGATTAAGACTCATTTAGAAGAAGACCCGGATGTATCTTTACCGAAACAAGAAGTGTATGATGAATACAAcatgTATTGTATAAGAAATTCTATGAAGCCGTTATCGACGGCTGATTTTGGAAAAGTCATGAAACAAGTATATCCGCGAGTGCGCCCTCGTAGGCTCGGCACACGGGGCAACTCTCGTTATTGTTACGCTGGTATGCGCAAGCGAATTAAATTGGATCCTCCAACACTGCCAAAGATATCTGGCTCTCAAACTgAGGAACATTTAGAGGAAAACATTACGGAGGAAATGCTAGGTGCTGCATCTATATTGATAAGAGAATGGGCGGAAAAAATGTTGGGCccaaaatttccaaatttgaGTGCCTTAGCTCGGCATCTTGTTGATAATTTTTGTGTTGATACTCGGTCTTTAGCTGCTGTATGCATTCTTTCAGCTTCGGATCAGCGTGATACTTCATTTAATAAAGAGGTAATTTCGGATCTACCAACACCACCTATAAGTGGTAAACCTATTAAGCTTCGAGAAGCTCAGTTACAATTGCAGCGCAAGCTTCAGCAACGCGAGTATATAAAAGATCAGAAGCATCGTTGTCCTGATTCTATTGTACAGagcAAAGAAAAATCCATTGATAGTAAGGGAAATATTAGTAAAGGATGCAAGAAGATCAAGTCCAATCAGTCACCTCAAGGTACAAatgcagcagcaacaacagtaGTTGCACAAAACTCATTAACAAAATTGAACTTATCTGCTGTAGTTTATAACCGGCAGAAAAAGGTATCGAAAAGTTACAatcaacagcaacagcagcaacaaacTTGTAATGTCTCTCAAGAGTCTAACTGTGATAACCTAGTGGTACAATCGCGCAATGACAGACAGAATAATAGCAACCCTAGAATAATGTTGAGTGCGCAGCGCGATGTCAAAGGTAAAAATTCCAGGAAACGTGCCAATAATCCAATTGTAGCACAGCAGGAGCCCAGCCCTGAGAAACAGACGAAGCTCACAGAGGAGAGTCCAGAGCATTCCAACGCTTTGTTACCCAAGTTAGCTTCTATCCAACGTGGCGGCAAGATATCAGTAATACTAGCTAGCTCAAAATCTATCAAGTATAAAGCAGTTGAGACTGCGGATAGTCAACTTGTTAAAAACTGTGATATTGACTCGTCGAAGAGTTGTTCCACTACTGGCAACATAGTGGAAACATCTTCGGGACTCCTTACGAGGGACCAGATCCGCCTCTTGCAAGATACGCCAGTCTTCAAAGATGGAAAAGTTCATGATATCGACACGGATGCCTTGGACGATTATCTAAATGGTGGGAACAATTCGCAGGAGCAAGAGGAGGAATTGCTACAGTATTTTCAGCAAAGTAGTTCATCTAGTTCTGATGTGGAAACTAGCGTCATTGGTTCCGATACCGAGCAGATCTCTCGGTCAGACAAAGTGTCGCAACTGCGATTAATATTGCAACAGAATTTGAAAGCACCCGTTATTGCCACCGATCTGATGCCCGTAACCATCGTTCGACAAAGCGTTGCTGTGGAAAAACGGGACTCCGCACAGAAACATAATCTCATACTCCCAACACTTCTAAATCATCCTAATCCGAGTAGTACGCGACGTCGTGTTAGTTTCGAAACTAATGTCGTCGAGCATGTCCAAGAGACGACAACGCCCAGTGTAGCCAATACTGTGCCACAGAGTCCAAATACGCGACGCAGAATATTTAACTTCACGCCGATCTCACCCGGACCGCATTCCCCTATTAATGGCCGCGCGTCTAAGTCAAACTCGGCAAACGCAAGTCCATTCGTATCTCCGCGTAACACACCGGTACCGAGATCGCGCAGTAACTTGCAAGCCGGCAGTTCCAGATCGCGTGGCCAAAAGACGCTCTCTCGTTCCATCTCGTGTAGTGTGCCGTACACCATTAAAACCACGGACACCTTTATCGTACCAACATCGAGCGGAGCGGAACACTCGCGGCAAGTGCTGACGGTGGCAACGAACAAGTCGTCGGAGGTCGTTCTGAAGGGACCACCATGCACTGCATTTCTGGACTTGACGCCTCAAAAACAATTACTAATCAATTATCCGAGTCAAGAAAATTTACAAGAGGTCAAGAATGTATATCAGAAGGGTCAGCCACCTCCACCCGATCAAGAGATTACGGAACTTCTTCACGCTAGCAGACACTTGAGCAATGAGCAATTATTCTATAGATCACAATCGGTGCCGTTACACAGGATGGTAAATCCCGTGTCTTTAATGTCTCCGATTTCTACGCAACAATGCCTATCATCGGTGCAAAATCAAAGCTTCAATCCATCAACAAGCAGTTCCATTGCGCCTACCCCAGTACCAAGCGAATACAATGACTTTGGTTCTTCTATCGGACAAGAGGGCACATATCTGTTGGACGACACAAACTTTATGTCGGACGAGCAACAGTTTTTAATAACGGACAAAGGGATCGCATCTGagaacattaataatatttttacgatcTTGGATGATGAGGGTCAGCCAAATTTGCAAATACTATCTGAACAGACTGCAGAAGAGACATTGAACAATACAATTGTTCTTGACGCTTTGCCGAATGCCAATTTAAATTTGTCGGAAGAAGATATGTTGGATCCGTCGAGCATTCTCACCGACGCTGGTGGCGCGTTACAGAAAATAATGCAATCGCGATCGTATCCGAACACGCCATTGCCGGCGCCAGTATCTGCATACACATCTTCGTATACAGAGGACAGTAACGGCTCCAGATCATACCCGTCGACACCTTTGCACACAATGCAATCCCAAGAAGTATACCAGGATCCAGGCGAGCCGATATTATCCAGTCCTATTCTTAATTCTCTTAGTTTACAGGGTGACGTAACAAACGTCGCTGTTGCCTCCGTAACTGGCGTCACAGCTGGTACTGATATTATCGTTGCCGCTGCAGCCGCTTCTTCCAATAGTCTCTGCAGGAACGTCGCTGATCTTCTGGAGGCTAGTTTTCTCGAAGAAGCCGACACGGAGACGGATGATCTGGATCCTCTTGGCAATTTTGACGGCCTGCAAGATATGGATTCGTTAACGCCGCTGTTCAATGAAGTCACAGAGCCTAATCGCTGA
Protein Sequence: MSTDSHDETKSCKTSARSEEENAFDVKRIKKERSDICVENGDTASITAATSTSSVTVATAATTVLEKRQPPAGRFASNGFHGDGDQLQDLVATKFATLANHGASSKQDKIRIMIEDGISEESRALVDKIFSQVEQLKIEEKLLLYLKLPLLLTNPSGTVDPLRQPLNPLGNRYEIHQTIMWIKTHLEEDPDVSLPKQEVYDEYNMYCIRNSMKPLSTADFGKVMKQVYPRVRPRRLGTRGNSRYCYAGMRKRIKLDPPTLPKISGSQTEEHLEENITEEMLGAASILIREWAEKMLGPKFPNLSALARHLVDNFCVDTRSLAAVCILSASDQRDTSFNKEVISDLPTPPISGKPIKLREAQLQLQRKLQQREYIKDQKHRCPDSIVQSKEKSIDSKGNISKGCKKIKSNQSPQGTNAAATTVVAQNSLTKLNLSAVVYNRQKKVSKSYNQQQQQQQTCNVSQESNCDNLVVQSRNDRQNNSNPRIMLSAQRDVKGKNSRKRANNPIVAQQEPSPEKQTKLTEESPEHSNALLPKLASIQRGGKISVILASSKSIKYKAVETADSQLVKNCDIDSSKSCSTTGNIVETSSGLLTRDQIRLLQDTPVFKDGKVHDIDTDALDDYLNGGNNSQEQEEELLQYFQQSSSSSSDVETSVIGSDTEQISRSDKVSQLRLILQQNLKAPVIATDLMPVTIVRQSVAVEKRDSAQKHNLILPTLLNHPNPSSTRRRVSFETNVVEHVQETTTPSVANTVPQSPNTRRRIFNFTPISPGPHSPINGRASKSNSANASPFVSPRNTPVPRSRSNLQAGSSRSRGQKTLSRSISCSVPYTIKTTDTFIVPTSSGAEHSRQVLTVATNKSSEVVLKGPPCTAFLDLTPQKQLLINYPSQENLQEVKNVYQKGQPPPPDQEITELLHASRHLSNEQLFYRSQSVPLHRMVNPVSLMSPISTQQCLSSVQNQSFNPSTSSSIAPTPVPSEYNDFGSSIGQEGTYLLDDTNFMSDEQQFLITDKGIASENINNIFTILDDEGQPNLQILSEQTAEETLNNTIVLDALPNANLNLSEEDMLDPSSILTDAGGALQKIMQSRSYPNTPLPAPVSAYTSSYTEDSNGSRSYPSTPLHTMQSQEVYQDPGEPILSSPILNSLSLQGDVTNVAVASVTGVTAGTDIIVAAAAASSNSLCRNVADLLEASFLEEADTETDDLDPLGNFDGLQDMDSLTPLFNEVTEPNR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00125653;
90% Identity: iTF_00014474; iTF_01261619; iTF_00015799; iTF_00181721; iTF_01477323; iTF_00181072; iTF_00417306; iTF_01476677; iTF_00016443; iTF_00015139;
80% Identity: -