Ttro004100.1
Basic Information
- Insect
- Trachelus troglodyta
- Gene Symbol
- -
- Assembly
- GCA_030142635.1
- Location
- JARQTJ010000356.1:2293544-2294294[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-20 5.8e-17 61.7 23.8 1 70 115 184 115 184 0.97
Sequence Information
- Coding Sequence
- ATGGAAAAGGATCACAGTCTTCCTGGGGGAAGCAATGCTCCCAGTGCTCCAACTCCATCAGCTCCACCATCCTATGAAGAAGCCATGGCACAATCCAGTGTCCCAATAGCACCTGTGCATGGTGCACCTTATCCTGTAGGACCCGTAAACATGCCAGTGCCTCATAATCAAAGACAATCCCAGCTTCATCCTCATCCACAACAAGGAGCAGCATCGATGCCAGCACCACCAAAATTCATGCCACAACCCTGCAGTTTCCCACAGACAGTTACTAGACAACAAAATTTTCCACAGCCTCCAACAGAAGTGCGCAGACCTCACACGATGACATATGTGATGGGTCCACATCCTATGAAGATGACGTGCCCAACTTGTTTTGCTGATATCAAAACAACAACAGTTTCTGATCATCAGCCCAGTGCACATATATGCTGCATCATTCTCTGTCTCATTGGATGCTGCCTGTGTTCCTGCCTGCCCTACTGTATGAGCGCATTCATGAGCGTACATCACTTCTGTCCTAATTGCAAAACCTACATTGCCACATGGAAGGGTTGA
- Protein Sequence
- MEKDHSLPGGSNAPSAPTPSAPPSYEEAMAQSSVPIAPVHGAPYPVGPVNMPVPHNQRQSQLHPHPQQGAASMPAPPKFMPQPCSFPQTVTRQQNFPQPPTEVRRPHTMTYVMGPHPMKMTCPTCFADIKTTTVSDHQPSAHICCIILCLIGCCLCSCLPYCMSAFMSVHHFCPNCKTYIATWKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00254755; iTF_00294915; iTF_00295683; iTF_00297220; iTF_01199078; iTF_00255495; iTF_00292615; iTF_01395527; iTF_00252489; iTF_00253993; iTF_01199819; iTF_00293390; iTF_01474353; iTF_01475124; iTF_00253238; iTF_01473592; iTF_00298745; iTF_00297979; iTF_00291966; iTF_00770782; iTF_00294143; iTF_00296447; iTF_01131243;
- 90% Identity
- iTF_00254755;
- 80% Identity
- -