Ttro002479.1
Basic Information
- Insect
- Trachelus troglodyta
- Gene Symbol
- Trl
- Assembly
- GCA_030142635.1
- Location
- JARQTJ010000201.1:105154-108451[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-21 3.7e-17 62.3 0.2 14 50 212 248 206 257 0.89 2 2 0.33 3.2e+03 -1.5 0.1 7 21 341 355 337 362 0.78
Sequence Information
- Coding Sequence
- ATGGGTAGCACCAGTCAGCTTTATAGCCTGTCATGGGGTGAATTTAGCACATCCCTTACATCTGCTGTGCAGCTTCTTAGAGGACATGGGGAACTCGTTGATGTCACTCTGGCAGCTGGTGGTCGCAGTTTTCCTGCGCATAAAATTGTCCTCTCTGCAGCAAGTCCTTTTTTACTAGATTTACTCAAAaGTACACCTTGCCAACACCCTGTAGTTATGCTAGCAGGTATCGGAGCAGATGATTTGGAATCATTACTTGAATTTGTATATCGAGGTGAAGTAAGCGTGGAACCAGCTCAATTACCTTCGTTGCTTCAAGCTGCCCATTGTTTGAGTATACATGGTTTGACACCACCGACAATACTAACAGAAaatggGGAGGAGATACCAATATCTGCAATACCCAGTGCAAATGAAGCCTTAACAAGGGACgtattaaattcttatctgCCTGTGcgcagaagaaaaaaaagaaggaagtcTTCGTCTTCATCCGGTAAATGGCCAAAGACAGAGGAGCACACGAATACCGAGAACAGACCTCTAGACAGCCAATCACAAGAGAACACGACAGCGGATTACGATCATAAGGACAGTGAAACCACGAGTCAAACCGAAGATATGGGAGATGGTAATTCCAAGGCTCGAAGTGTGTCAGATCAACCAGCAACGTGTCCACTGTGCGGTGCTGTGTTACGTCAGTCCAGGAACCTTCGAAGGCACTTGGAGTTGTTACACTTTGGTACTGGAAAACCAACAAAACAAGGAGTGTGTATAAGTGGTCGAAGAAGCTCCAGGAATAGCGACTTGCTACGATCACCATCCTTATGTTCAAATCGTGTCACCCCTACCAGTAGAATTGATCATCCTCACCCAAGACCTTCGGACAGTTCTGATATGCAGACAGTTACACCATTGTCGATAGCTTCCGTAGTGAGTTCCAGTGCATCGAACATGAGTATTCCTGGAAATCTCATGGTACCTGGAGCAAGCATTCTCTCAGGAAGTAATGAACAAAGTGTTCATCCGGTTGGTACAATTCCACCATCTTCCTGTATGAGTTCCATGGGTCCTCCCCATAATGGTATCTACTCCTCGGATAGTACAACGAGTATGCTCAGCTGTCTGTTACCTCCGTTACCATCCTTACCCTCGTTATCATCACCTCATGACGTATTTCGTCATAGTGAAATGCTGCGAGCTGGCGTGGCTTACTACGACACTTCTAGACAACCCTCAAGACATATTCAACGCACCGACGTCACTTAA
- Protein Sequence
- MGSTSQLYSLSWGEFSTSLTSAVQLLRGHGELVDVTLAAGGRSFPAHKIVLSAASPFLLDLLKSTPCQHPVVMLAGIGADDLESLLEFVYRGEVSVEPAQLPSLLQAAHCLSIHGLTPPTILTENGEEIPISAIPSANEALTRDVLNSYLPVRRRKKRRKSSSSSGKWPKTEEHTNTENRPLDSQSQENTTADYDHKDSETTSQTEDMGDGNSKARSVSDQPATCPLCGAVLRQSRNLRRHLELLHFGTGKPTKQGVCISGRRSSRNSDLLRSPSLCSNRVTPTSRIDHPHPRPSDSSDMQTVTPLSIASVVSSSASNMSIPGNLMVPGASILSGSNEQSVHPVGTIPPSSCMSSMGPPHNGIYSSDSTTSMLSCLLPPLPSLPSLSSPHDVFRHSEMLRAGVAYYDTSRQPSRHIQRTDVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01475586; iTF_00296929; iTF_01130947; iTF_00252197; iTF_00255205; iTF_01395237; iTF_01474341; iTF_00253227; iTF_01473581; iTF_00252942; iTF_00298735; iTF_00297969; iTF_01474065; iTF_00291955; iTF_00296436; iTF_00294134; iTF_00298454; iTF_00291671; iTF_00292375; iTF_00254744; iTF_00295672; iTF_00294617; iTF_00294905; iTF_00296153; iTF_00297210; iTF_00297691; iTF_01473308; iTF_00255485; iTF_00292605; iTF_00295389; iTF_00252478; iTF_01395518; iTF_00254463; iTF_00293856; iTF_01131232; iTF_01199526; iTF_01198792; iTF_00770770; iTF_00770490; iTF_01199066; iTF_01199807; iTF_00253707; iTF_01474827; iTF_01475115; iTF_00253982;
- 90% Identity
- iTF_00296929;
- 80% Identity
- iTF_01475586;