Ttab011627.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trachelus tabidus
Gene Symbol
Hr39
Assembly
GCA_030142655.1
Location
JARQTI010000722.1:188116-191599[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 0.83 9.9e+03 -4.0 11.7 69 164 213 315 180 361 0.55
2 4 0.87 1e+04 -4.1 3.4 78 129 342 399 308 435 0.45
3 4 3.7e-08 0.00044 20.2 0.0 1 21 517 537 517 541 0.92
4 4 2.3e-70 2.8e-66 225.0 0.0 197 408 698 902 676 902 0.94

Sequence Information

Coding Sequence
ATGTCGGAGCAAAACGGGCCCACGGAGGGCCCGGGCCCAGGCTGGTGGCCTCCGGCACAGTCCTGGAAGTCATCTTCGTTGGGCGCACGCACCGAGGCTGGGAAGAACGTTTCCGTCACTACGATTAACGTACCACCGGCCCATGAGATGCATGACGGTAAGAGCGTCTGCAAGTATCTGGGAGGACAGAATGGCGTGACGGTTTCAGTGGTGTCCAGCTGCGGATCAGCTTCCGCTTCTGGGTCCAGTAATGTCGTCGGTACCGGAAACGCTGGCGAGTCCGGTTCCGTGGACGACGTTGAAGACAGTGACGGTGAGGTGAGCAAGATCGACTTCCGGGGTGTTAATCTGCGCACGAAGAAGAAACGGGATGCTTCCGGCGGACAAGAAAGTGAGAACAGTGCAATTGGCACTGACAATATTCAGCAGCAACCCGAAAGGCCAATGTCTTGGGAGGGTGAACTCTCGGATCAAGAAATGTCTTCCAATACTATCACGAACCAGGACCACGAAGAAACGTTTATGGAGGGTGTACAAGTGTGCAGTGCGAGTCCTGGACCGCAGGAACAAAAGTTTCCAATAAAACCGGAGCCGGACTTTAGGTCAAGTCCAGGACTCGCTTTGGGCTCCCTTAATGAGACGGCCTTGCCGCTTACTCATGCTCAGCAactgcagcagcagcaaaaacaacaacagcaacagcagcaacaacaacgtGGTCTGGACGGTCTTGAACAGACACAGCAGAGCGACCTACCCTTGCTGGTTGGAAAACTCCTAGGGGGTTATAATAGTTCAACCCCGAATCACAGTCCTGTACTAAATCCCCGGCATCATCTTACTAAGCACAGTCACACCCGGTCTCAAGTCCCTTCGCCGGATTCGGCGATTCACTCGGCCTACAGTGTCTTTAGCTCTCCCACGCAGAGTCCTCACGCGGCACGGCACTCTGCACTAGGTGCTGGCAGTCCTGTACCATCCTCATCGCTGTCACTTTCACGACACAGTTTCAATAATTCTACGTCTTCGTTAtccttgtctctctcgcactctctatCGAGGAACAATTCGGACGCCTCCAGTAGCTGTTACAGCTACGGATCCCTTAGTCCACCGACACACTCGCCCGTCCAGCAACCGAGGCATTCCCAtccgcagcagcagcatcatcAAGTCACTCAGGGCAGTCCTTTACATCTACCCGCAGCCACCGGCGCCACTCATCATTATTCCACTCCGGGATCGGAACTCTCGGAGGGTCTCGCAGAGGACCAAGAAGACTGTAGGATAGCGCCGGCACCCTCGGGCATCTCCACAAGGCAGCAACTTATAAATAGTCCATGTCCCATATGCGGCGACAAGATCAGTGGCTTCCATTATGGTATATTCTCCTGCGAATCCTGTAAGGGATTCTTCAAGAGGACCGTACAGAATCGTAAGAATTATGTGTGCCTACGTGGCGCGGGATGCCCCGTCACTGTCGCCACTAGGAAGAAGTGTCCAGCATGCCGATTCGACAAGTGCCTGAATATGGGAATGAAGCTGGAAGCGATAAGGGAGGATAGGACTAGAGGCGGTCGCAGTACCTATCAGTGTACCTATACTCTACCTGCTAACCTTATCGGCGGGCCTGCTGGTGGGATTTCCGGTGATAAAATCACCGGTGGTACCTGTAGTCCAGCACCGCCGGGATCGGAGCATCATCACTCAATGAGATATCATTCAAATCATTCGCACAAGTTGCAAATGGTGCCACAGCTCCTACAGGACATCATGGACGTGGAGCATCTCTGGCATTACAACGACAATGATCGTATGACTAGTGGCCAGGGTAGTGGTATCAGTGGTGGTAACGGTAGTGGTAGCGCtggcggtggcggtggtggtggtagcgGTAGCGTTAGTGGTGTCAGTGGTAGTGCTAGTGGCGGTGGAAATTCATCCGGAGGCGGAAGTTCATCCGCCGTCGGAAGTAACGGGAACATACCTGGAGGAGAATCGTCGAGACCAAGTTCCGCGGGTCCTCCGTCCTCCAATCACGAACAACATTCACCACCAGCGAGTACCCCTAACTCGAATTCAACCTCCAATCCTAATGGGAATTCCACGCAGCATCCGGACTTTCTTTCGAATCTGTGTAACATCGCCGATCATAGACTCTACAAGATCGTGAAGTGGTGCAAGAGTCTACCGCTCTTCAAGAACATCTCCATAGACGATCAGATATGCCTTCTTATCAATTCCTGGTGCGAACTTCTCTTATTCTCCTGCTGCTTTCGCAGTATGAGTACGCCTGGTGAGATCAGGGTGTCCCTTGGCAAGTCGATAACTCTCGAACAGGCGAGACAGTTAGGTCTTGCGACGTGTATCGAGAGGATGCTGGCCTTCACAAATAACCTTAGACGGCTCAGGGTGGATCAGTACGAGTACGTGGCGATGAAGGTCATAGTTTTGCTAACCTCGGACACCAGTGAACTGAAAGAACCCGAGAAGGTAAGAGCGTCCCAGGAGAAGGCTCTCCAGGCACTGCAGCAATATACAATCGCAAGGTATCCCGAGATGCCGGCAAAGTTCGGAGAGTTGCTACTCAGGATCCCGGACCTGCAGAGGACCTGTCAGGCCGGGAAGGAGTTGCTCAGCGCAAAGCGTGCCGAGGGCGAAGGCAGCTCTTTCAATCTACTAATGGAACTTCTACGAGGCGATCATTGA
Protein Sequence
MSEQNGPTEGPGPGWWPPAQSWKSSSLGARTEAGKNVSVTTINVPPAHEMHDGKSVCKYLGGQNGVTVSVVSSCGSASASGSSNVVGTGNAGESGSVDDVEDSDGEVSKIDFRGVNLRTKKKRDASGGQESENSAIGTDNIQQQPERPMSWEGELSDQEMSSNTITNQDHEETFMEGVQVCSASPGPQEQKFPIKPEPDFRSSPGLALGSLNETALPLTHAQQLQQQQKQQQQQQQQQRGLDGLEQTQQSDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPVPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHSHPQQQHHQVTQGSPLHLPAATGATHHYSTPGSELSEGLAEDQEDCRIAPAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLIGGPAGGISGDKITGGTCSPAPPGSEHHHSMRYHSNHSHKLQMVPQLLQDIMDVEHLWHYNDNDRMTSGQGSGISGGNGSGSAGGGGGGGSGSVSGVSGSASGGGNSSGGGSSSAVGSNGNIPGGESSRPSSAGPPSSNHEQHSPPASTPNSNSTSNPNGNSTQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00676835;
90% Identity
iTF_00770401;
80% Identity
iTF_01474777;