Tiud006331.1
Basic Information
- Insect
- Trachelus iudaicus
- Gene Symbol
- -
- Assembly
- GCA_030142595.1
- Location
- JARQTH010000347.1:200616-201083[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.9e-09 1.1e-05 25.0 0.0 1 35 14 48 14 55 0.90 2 2 4.9 5.5e+03 -2.8 0.0 16 23 135 143 131 144 0.72
Sequence Information
- Coding Sequence
- atggCAAAAAGCAAGAAGGAACCAAAGCGAAAGAGGTATACCGAGGAAACATTGAAAGCAGCTGTAGCTGCTGTGAGGACTGGACGAGGGTTTCAAGCTGTCAGTGTGGAGTTCGGCATCCCAAAGACTACCCTCTTCGCCAAACTGAAAGATTCCAATccagtaattaaaaaagaaggacCAGGGACAGTGCTATCCGATAAAGAAGAGCAACAACTTGTTAAGTGGATCATGCAGATGAGTGTGTGCGACTTTCCTGTGACGAAGAGCATACTTGTAAGCAGTGTAACGAGTCTTATTAAGGAGCAAAAACGTGATAATCCCTTCACGAATAATGTTCCAGGTCGCAGTTGGTATGAGGGATTTCTCAAACGTCATGCAAAGTTAACTTGTAGGATTGAACAAAATTTGTCATACTCACGAGCCTCAGTTACCGAAagtattttacgaaaaaataaagaaaagtaa
- Protein Sequence
- MAKSKKEPKRKRYTEETLKAAVAAVRTGRGFQAVSVEFGIPKTTLFAKLKDSNPVIKKEGPGTVLSDKEEQQLVKWIMQMSVCDFPVTKSILVSSVTSLIKEQKRDNPFTNNVPGRSWYEGFLKRHAKLTCRIEQNLSYSRASVTESILRKNKEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00294396;
- 90% Identity
- -
- 80% Identity
- -