Tman001881.1
Basic Information
- Insect
- Trabutina mannipara
- Gene Symbol
- -
- Assembly
- GCA_900080175.1
- Location
- FKYK01016397.1:318-5344[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0067 41 4.4 0.1 25 45 32 52 16 57 0.79 2 11 0.074 4.5e+02 1.1 0.0 22 42 58 78 52 88 0.76 3 11 0.067 4.1e+02 1.2 0.1 27 45 104 122 96 128 0.88 4 11 0.038 2.3e+02 2.0 0.0 13 40 135 168 131 180 0.71 5 11 0.036 2.2e+02 2.1 0.0 17 45 184 212 175 215 0.87 6 11 0.016 99 3.2 0.1 22 43 218 239 213 243 0.88 7 11 0.00016 1 9.6 0.0 18 46 256 284 253 290 0.92 8 11 0.0036 22 5.3 0.1 26 45 317 336 312 345 0.89 9 11 0.087 5.3e+02 0.9 0.3 26 48 346 368 336 371 0.85 10 11 0.28 1.7e+03 -0.8 0.1 27 45 399 417 396 425 0.87 11 11 0.024 1.5e+02 2.6 0.1 26 48 427 449 416 451 0.87
Sequence Information
- Coding Sequence
- ATGGagATACCATACCAACCTGGAAATGAAATAGTGTTTCAATTAGGAAAAGCTATGTGGAGAAAAGCCAGTCCGGCAGAGTTACCGCGATTATTATCGTGTCCGGATTGCGGTAGTGTGTTTAAATACAAGTGCAACTTGACGACTCATTTGAAAGCCAAATGTGGCCAAAGGAAACCTTTTAAATGCGATGTTTGTTTTAAGACATTTGGACaatcAGACCCACTATACATCACCGATGAACCAAATCACTATTGCCGACAACAATTATGGGAACCATACGACGAAAGGACACGAAAAAGGTTTCCCTGCTCCGGTTGCAGCAGTATATTTAAATACAAACGTAACCTAATAGCTCATTTGAAAACCGAATGTGGCAAGAAGAGATTATTTAAATGCGATGAGCAACCGCGTGGTCGGTCGGTAACTGTCGGTTTGGAAAAATCAGCGGATGCGTTTATGTGCCCCGATTGCGACAGCGTCTTCAAATACAAGCgAGTCCTCGAAGTGAGTTATAATCAAAAGCAACATCTGTGGCCTGTAACAGaagctagaaaaaaatctgccgaAGGTTTCAAATGTCCTGGATGTAACAGCTCGTTTAAATACAAACATAACTTGATACCTCATTTGAAAGCCGAATGTGGCAAGAAAAAGCCATTTAAATGTAACATatgttttaaagaattcagCTATAAGCAAAACATTCGACGACAACAGAATGAGCAGTATCAAGAATGGATTGCGGATCAGGTGGCTTTCGACCAGTCGCAAGAAGAATCAAAATTCTCTTGTCCCAACTGTagcaatattttcaagtataaaGCCAACTTGAAAActcatttgaaaatcgattgtGGCAAAAAGAAACCATTCAAGTACTTGCGGTATCAAAACGAAAGCAAATCGAGGCGAATGACGAATGTTGCACATGTACTGGAACAATTTCAATGTCCAGAttgtggaaatatttttaaatacaaaaacaacTTGAGGGCTCATTTAAGAACCAAATGTGGAAAGAAAAGGTCCTTTAAGTGTGAAGTCTGCTTTAGGGCATTTGCTTACAAACATCATCTAAAATCTCACATGGaaaattctCATCACGGTTATGGAACGCTTGCCAACTTGATTCAACCACAATGGAATACTGCCAGTAGCAGAGTAGAAAATATTCGCGATATAATTTACCGTTGTAAAGAATGTAGTGCCGTTTTCGAATCCAAGCGCTGCTTGTCATCTCACATGAAAAGCGAATGTATCAGAAAGAAGACGTTTCAATGTAACGTTTGTTTGAAGATATTCAATTACAAGCATAATCTAAAAACTCACATGGGTATTGTCCACAGAAAACTACTTCTAGAGTGA
- Protein Sequence
- MEIPYQPGNEIVFQLGKAMWRKASPAELPRLLSCPDCGSVFKYKCNLTTHLKAKCGQRKPFKCDVCFKTFGQSDPLYITDEPNHYCRQQLWEPYDERTRKRFPCSGCSSIFKYKRNLIAHLKTECGKKRLFKCDEQPRGRSVTVGLEKSADAFMCPDCDSVFKYKRVLEVSYNQKQHLWPVTEARKKSAEGFKCPGCNSSFKYKHNLIPHLKAECGKKKPFKCNICFKEFSYKQNIRRQQNEQYQEWIADQVAFDQSQEESKFSCPNCSNIFKYKANLKTHLKIDCGKKKPFKYLRYQNESKSRRMTNVAHVLEQFQCPDCGNIFKYKNNLRAHLRTKCGKKRSFKCEVCFRAFAYKHHLKSHMENSHHGYGTLANLIQPQWNTASSRVENIRDIIYRCKECSAVFESKRCLSSHMKSECIRKKTFQCNVCLKIFNYKHNLKTHMGIVHRKLLLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01472642;
- 90% Identity
- iTF_01472642;
- 80% Identity
- iTF_01472642;