Basic Information

Insect: Trabutina mannipara
Gene Symbol: -
Assembly: GCA_900080175.1
Location: FKYK01003852.1:15480-18607[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00018 0.015 15.7 3.6 1 23 238 260 238 260 0.97

2 11 8.6e-06 0.00072 19.9 1.7 1 23 266 288 266 288 0.98

3 11 0.0051 0.42 11.2 4.4 1 23 294 317 294 317 0.95

4 11 0.052 4.3 8.0 3.3 1 21 323 343 323 345 0.95

5 11 0.00015 0.013 16.0 2.8 1 23 351 373 351 373 0.99

6 11 5.4e-05 0.0045 17.4 1.9 1 23 379 401 379 401 0.98

7 11 0.00066 0.055 14.0 1.1 1 23 410 433 410 433 0.97

8 11 8.3e-05 0.0069 16.8 2.8 1 23 439 461 439 461 0.98

9 11 0.0013 0.1 13.1 1.0 2 23 468 489 467 489 0.97

10 11 2.1e-05 0.0018 18.7 5.4 1 23 495 518 495 518 0.96

11 11 8.4e-07 7e-05 23.1 5.4 1 23 532 554 532 554 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00018	0.015	15.7	3.6	1	23	238	260	238	260	0.97
2	11	8.6e-06	0.00072	19.9	1.7	1	23	266	288	266	288	0.98
3	11	0.0051	0.42	11.2	4.4	1	23	294	317	294	317	0.95
4	11	0.052	4.3	8.0	3.3	1	21	323	343	323	345	0.95
5	11	0.00015	0.013	16.0	2.8	1	23	351	373	351	373	0.99
6	11	5.4e-05	0.0045	17.4	1.9	1	23	379	401	379	401	0.98
7	11	0.00066	0.055	14.0	1.1	1	23	410	433	410	433	0.97
8	11	8.3e-05	0.0069	16.8	2.8	1	23	439	461	439	461	0.98
9	11	0.0013	0.1	13.1	1.0	2	23	468	489	467	489	0.97
10	11	2.1e-05	0.0018	18.7	5.4	1	23	495	518	495	518	0.96
11	11	8.4e-07	7e-05	23.1	5.4	1	23	532	554	532	554	0.98

Sequence Information

Coding Sequence: ATGACTGACAGTGATATAAAATCCGAAACCACCGGTGTTAATACGGATCAAGGcattaaaattgaagtgtTGGTCCCCAGTGGTGATGGCACACATGAAAACATCacagatattcaaaattatctgcAAACATTCAACAAGGAAATTCAAACGATTCAAGCTGAATCTACCCAAAATGATGCCGAGTCTCAAAACGTTACTGAAGACTCAAACACATTCTACGTCACCGAAAATGGAGAATATTTCATTGATGGCCAAGTAATGACAGTCGTGAACGGCGATAAAGACTCCGGAATTCAAACCACAAATACCATCTCTCTTGAGGGTAATGAAAAATCTAGTCAAAAAGATAGTTTGCAGGATGACAGAGACATTGTTACCGCTGATAATCGAGATAAGGTGGCGAGTAAAATGAGTCAAGTTAATCATATAATTTCGGGAGATGACACTTTTCAAACAGTTACCATTGTACCAACTGAAACCAATCCTGGAGAAGTGAGCTATGTATTAATTGTTCAACAACCTAATGaaggagagaaagaaaaagaaggagAAGGACAAGAAGGCGACGATCAAGATATTACGGTTTATGATTTTGACGATCCTGAAGATCCCTCTTCTGCCAATGGCGCAGGAGATTCTGCTGACGAAgatgataaatcaaaaattatgaaaattgtaacCAGAAAATCTCAAAGCGTTTCTCAGGCTCATATGTGTAATTATTGTGATTATACAAGTCCTAAAAGGTATTTATTGTCGAGACATATGAAGTCTCATTCTGAAGAGAGACCACATAAATGTAGTGTATGCGACCGTGGATTTAAAACGATGGCATCTCTACAAAATCACGTAAATACGCACACTGGGACTAAACCTCATCActgtaaattttgttccaGTGCTTTCACTACTTCCgGTGAACTTGTGCGTCATGTTCGCTATAAACATACCCACGAAAAACCTCACAAGTGTTCGATTTGTGACTATGCTAGTGTTGAATTAagtaaaatgagaaatcaTATGAGATGCCATACTGGAGAACGACCGTATCAGTGTCAGCATTGCACCTATGCTAGCCCTGATTCATTCAAGTTGAAACGCCATTTACGAATTCACACTGGTGAACGACCATATGAGTGTGATATTTGTCATTCAAGATTTACCCAGTCAAACAGTTTGAAAGCTCACAAATTAATACATAGCGATGACAGTGATAAACCCGTATTCAAGTGTGACTTATGTCCAGCCACTTGCGGCCGTAAAACAGATTTACGAATTCATGTTCAAAAGCTGCATACATCTGATCGAATATTCACTTGTCGCAGATGTGGTAAAACTTTTCCAGATAGATATTCCTACAAAGTTCATAATAAATCCCACGAAGgcgaaaaatgttggaaatgtGATCTATGCCCTTATGCTTCGGTCTCCCATCGACATCTAGAATCACACATGTTAATTCATACCGATCAGAAGCCATTCCGTTGTTCCTTATGCGACCAGTGTTTCCGCCAGAAACAACTTCTAAAACGCCACCAAAACCTATACCATGATCCCACATACGTACCCCCGCCACCTAAAGAAAAAACCCACGAGTGTCCCGAGTGTAAACGGGCTTTCCGACACAAGGGTAACCTAATTCGTCACATGTGTATGCACGACCCAGATTCCGAAGCAATTCAAACCGCGAACGCCCTCAAAATGGGacgtcagaaaaaaatccaagttgtTAACGGCGAAGAACTGAAAATCGTTCCGAGCGATGAAGACATCGCCACGAAAGATGAAATTACCGAAAGCGATGCTAAGTTGTTAAAGAACGAATTAGGAAATCAGCTTATCGAAGGCGCAGATGGACAACACTACGTTGTCTTGGAAGTTATTCAGTTGCAAGGTGGTGATGGTGAACAGGCGGTAGCCGTGGTTTCTGAAGGCGATTTTCAAAGTGGAACTTTGAATATAGGTGGTGGCAATTCTCACCAGTTTATTACTCCAGATTATGAGGAAATCGGTAGTGATAAAACTGAgctgaaaattgtcaaaaattccgCCTCCATCGGTGACCAAAATTGTTTCGGTTTtgacgacgaagaagaagatgaAGATGAAGAAATGGACAATTAA
Protein Sequence: MTDSDIKSETTGVNTDQGIKIEVLVPSGDGTHENITDIQNYLQTFNKEIQTIQAESTQNDAESQNVTEDSNTFYVTENGEYFIDGQVMTVVNGDKDSGIQTTNTISLEGNEKSSQKDSLQDDRDIVTADNRDKVASKMSQVNHIISGDDTFQTVTIVPTETNPGEVSYVLIVQQPNEGEKEKEGEGQEGDDQDITVYDFDDPEDPSSANGAGDSADEDDKSKIMKIVTRKSQSVSQAHMCNYCDYTSPKRYLLSRHMKSHSEERPHKCSVCDRGFKTMASLQNHVNTHTGTKPHHCKFCSSAFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRCHTGERPYQCQHCTYASPDSFKLKRHLRIHTGERPYECDICHSRFTQSNSLKAHKLIHSDDSDKPVFKCDLCPATCGRKTDLRIHVQKLHTSDRIFTCRRCGKTFPDRYSYKVHNKSHEGEKCWKCDLCPYASVSHRHLESHMLIHTDQKPFRCSLCDQCFRQKQLLKRHQNLYHDPTYVPPPPKEKTHECPECKRAFRHKGNLIRHMCMHDPDSEAIQTANALKMGRQKKIQVVNGEELKIVPSDEDIATKDEITESDAKLLKNELGNQLIEGADGQHYVVLEVIQLQGGDGEQAVAVVSEGDFQSGTLNIGGGNSHQFITPDYEEIGSDKTELKIVKNSASIGDQNCFGFDDEEEDEDEEMDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01262814;
90% Identity: iTF_01150676;
80% Identity: -