Basic Information

Insect: Paracoccus marginatus
Gene Symbol: -
Assembly: GCA_900065295.1
Location: FIZT01057810.1:14801-17861[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00023 0.018 15.7 3.6 1 23 239 261 239 261 0.97

2 11 1.1e-05 0.00086 19.9 1.7 1 23 267 289 267 289 0.98

3 11 0.0064 0.51 11.1 4.4 1 23 295 318 295 318 0.95

4 11 0.065 5.2 8.0 3.3 1 21 324 344 324 346 0.95

5 11 0.00019 0.015 15.9 2.8 1 23 352 374 352 374 0.99

6 11 6.8e-05 0.0054 17.3 1.9 1 23 380 402 380 402 0.98

7 11 0.00083 0.066 13.9 1.1 1 23 411 434 411 434 0.97

8 11 0.0001 0.0083 16.8 2.8 1 23 440 462 440 462 0.98

9 11 0.0016 0.13 13.1 1.0 2 23 469 490 468 490 0.97

10 11 2.7e-05 0.0021 18.6 5.4 1 23 496 519 496 519 0.96

11 11 1e-06 8.4e-05 23.0 5.4 1 23 533 555 533 555 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00023	0.018	15.7	3.6	1	23	239	261	239	261	0.97
2	11	1.1e-05	0.00086	19.9	1.7	1	23	267	289	267	289	0.98
3	11	0.0064	0.51	11.1	4.4	1	23	295	318	295	318	0.95
4	11	0.065	5.2	8.0	3.3	1	21	324	344	324	346	0.95
5	11	0.00019	0.015	15.9	2.8	1	23	352	374	352	374	0.99
6	11	6.8e-05	0.0054	17.3	1.9	1	23	380	402	380	402	0.98
7	11	0.00083	0.066	13.9	1.1	1	23	411	434	411	434	0.97
8	11	0.0001	0.0083	16.8	2.8	1	23	440	462	440	462	0.98
9	11	0.0016	0.13	13.1	1.0	2	23	469	490	468	490	0.97
10	11	2.7e-05	0.0021	18.6	5.4	1	23	496	519	496	519	0.96
11	11	1e-06	8.4e-05	23.0	5.4	1	23	533	555	533	555	0.98

Sequence Information

Coding Sequence: ATGACTGATAATGATATTAAATCCGaaaccACCGGCGTTAATACCGATCAAGGcattaaaattgaagttttggtTCCCGGTGGCGATGGCACACATGAAAATATCACAGATATACAAAACTATCTACAAACATTCAACAAAGAAATTCAAACGATTCAAGCAGAATCTACCCAAGCTGTAGATGGCGAGTCTCAAAATGTTACCGGAGAATCAAACACATTCTACGTCACCGAGAATGGAGAATATTTTATTGATGGGCAAGTGATGACGGTCGTGAGCGGCGATAAAGATTCTGGAATCCAAACCGCCAATGCCATCTCCATCGAGGGTGATGAAAAATCTAGTCAAAAAGATAGTTTGCAGAATGACGGAGACATTGTCACCGCTGATAATCAAGATAAGACGGTGAGCAAGATTAGTCAAGTTAATCATATAATTTCGGGAGACGACACCTTTCAAACAGTTACCATTGTACCGACTGAAACCAATCCTGGAGAAGTGAGCTATGTGTTAATTGTTCAACAACCTAATGATGAAGAAGGGAAAGAAAAGGAAGAAGGAGAAGAAGGCGATGATCAAGATATTACTGTTTATGATTTTGACGATCCTGAAGATCCCTCCTCTGCCAATGGCGCAGGAGATTCCGCTGACGAAgatgataaatcaaaaattatgaaaatcgtAACCAGAAAATCGCAAAGCGTTTCTCAAGCCCATATGTGTAATTATTGTGACTATACGAGTCCTAAAAGATATTTACTGTCGAGACATATGAAGTCTCATTCTGAGGAGAGGCCACATAAATGTAGTGTATGTGATCGTGGATTTAAAACGATGGCATCGCTACAAAATCACGTAAATACGCATACTGGGACTAAACCTCATCACTGCAAATTTTGTTCCAGTGCTTTCACGACCTCCGGTGAACTTGTGCGTCATGTTCGCTATAAACATACCCACGAAAAACCTCACAAGTGTTCGATTTGTGACTATGCCAGCGTTGAATTGAGTAAAATGAGAAATCATATGAGATGCCACACTGGAGAACGACCTTATCAGTGTCAGCATTGCACCTATGCTAGTCCCGATTCATTCAAATTGAAACGCCATTTACGAATTCACACTGGCGAACGACCGTACGAGTGTGATATTTGTCATTCGAGATTTACTCAGTCAAACAGTTTGAAAGCTCATAAATTGATACATAGCGATGATAGTGATAAACCTGTATTCAAGTGTGACCTGTGTCCAGCTACTTGTGGCCGTAAAACCGATTTACGAATccatgttcaaaaattgcatacATCTGATCGAATATTCACTTGTCGCAGATGTGGTAAAACTTTCCCAGACAGATATTCTTATAAAGTTCACAATAAATCCCACGAAGGCGAAAAATGCTGGAAATGCGATTTATGTCCTTATGCTTCAGTCTCTCATCGACACCTGGAATCACACATGTTGATTCATACGGATCAGAAGCCATTCCGATGTTCCTTATGCGACCAGTGTTTCCGCCAAAAACAACTTCTAAAACGCCACCAAAACCTATACCACGATCCCACCTACGTACCTCCGCCGCCTAAAGAGAAAACCCACGAGTGTCCCGAATGTAAACGAGCTTTCCGACACAAGGGTAACCTAATTCGTCATATGTGTATGCACGATCCAGATTCCGAAGCAATTCAAACCGCGAACGCGCTCAAAATGGGtcgtcagaaaaaaatccaggTCGTAAACggcgaagaattgaaaatcgttcCGAGCGACGAAGACATCGTCATGAAAGACGAAATTACCGAAAGCGATGCTAAATTGTTGAAGAGCGAATTGGGAAATCAGCTCATTGAAGGAGCAGACGGACAACACTACGTTGTTTTGGAAGTTATTCAGTTGCAAGGTGGAGATGGTGAACAGGCGGTAGCTGTGGTTTCTGAAGGCGATTTCCAAAGTGGAACTTTGAATATCGGCGGTGGCAACGCTGGCCAATTTATTACTCCGGATTATGGTaatattatttacttattacAAAGCTgtttaatgtatttttatcgaaaaactgatgaattatTTTGTGTGTTCGGTAAAGCAGAGGAAATCAGTGGTAATAAAactgagttgaaaattgtcaaaagttCCGCCTCGACCGGTGACCAGAATTGTTTCGGTTTTGACGACGAAGAAGATGACGAAATGGACGACTAA
Protein Sequence: MTDNDIKSETTGVNTDQGIKIEVLVPGGDGTHENITDIQNYLQTFNKEIQTIQAESTQAVDGESQNVTGESNTFYVTENGEYFIDGQVMTVVSGDKDSGIQTANAISIEGDEKSSQKDSLQNDGDIVTADNQDKTVSKISQVNHIISGDDTFQTVTIVPTETNPGEVSYVLIVQQPNDEEGKEKEEGEEGDDQDITVYDFDDPEDPSSANGAGDSADEDDKSKIMKIVTRKSQSVSQAHMCNYCDYTSPKRYLLSRHMKSHSEERPHKCSVCDRGFKTMASLQNHVNTHTGTKPHHCKFCSSAFTTSGELVRHVRYKHTHEKPHKCSICDYASVELSKMRNHMRCHTGERPYQCQHCTYASPDSFKLKRHLRIHTGERPYECDICHSRFTQSNSLKAHKLIHSDDSDKPVFKCDLCPATCGRKTDLRIHVQKLHTSDRIFTCRRCGKTFPDRYSYKVHNKSHEGEKCWKCDLCPYASVSHRHLESHMLIHTDQKPFRCSLCDQCFRQKQLLKRHQNLYHDPTYVPPPPKEKTHECPECKRAFRHKGNLIRHMCMHDPDSEAIQTANALKMGRQKKIQVVNGEELKIVPSDEDIVMKDEITESDAKLLKSELGNQLIEGADGQHYVVLEVIQLQGGDGEQAVAVVSEGDFQSGTLNIGGGNAGQFITPDYGNIIYLLQSCLMYFYRKTDELFCVFGKAEEISGNKTELKIVKSSASTGDQNCFGFDDEEDDEMDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01262814;
90% Identity: iTF_01472644;
80% Identity: -