Tman004640.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trabutina mannipara
Gene Symbol
-
Assembly
GCA_900080175.1
Location
FKYK01016236.1:176-4740[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 36 5.7e-07 4.8e-05 23.6 0.7 1 23 153 175 153 175 0.98
2 36 0.00015 0.013 16.0 0.9 1 23 211 233 211 233 0.98
3 36 1.8e-05 0.0015 18.9 1.5 1 23 249 271 249 271 0.98
4 36 0.0032 0.27 11.8 0.9 1 23 276 298 276 298 0.97
5 36 0.0017 0.15 12.7 1.9 1 20 304 323 304 326 0.92
6 36 0.38 32 5.3 7.4 1 23 331 353 331 353 0.93
7 36 1.3e-05 0.0011 19.4 2.0 1 23 359 381 359 381 0.98
8 36 0.0025 0.21 12.1 1.4 1 23 385 407 385 407 0.99
9 36 0.038 3.2 8.4 0.3 1 23 521 543 521 543 0.97
10 36 0.0002 0.017 15.6 7.0 2 23 550 571 549 571 0.96
11 36 0.0089 0.74 10.4 0.4 1 23 574 596 574 596 0.97
12 36 1.5e-05 0.0012 19.2 3.9 1 23 601 623 601 623 0.99
13 36 5.6e-07 4.7e-05 23.6 0.4 1 23 627 649 627 649 0.99
14 36 1.5e-06 0.00013 22.3 1.8 1 23 653 675 653 675 0.99
15 36 6.9e-06 0.00057 20.2 1.8 1 23 679 702 679 702 0.97
16 36 7.9e-05 0.0066 16.9 3.3 1 23 707 729 707 729 0.97
17 36 0.0042 0.35 11.5 6.1 1 23 733 755 733 755 0.99
18 36 1.7e-06 0.00014 22.1 3.4 1 23 762 784 762 784 0.98
19 36 0.0023 0.19 12.3 2.1 1 23 788 811 788 811 0.98
20 36 0.0059 0.49 11.0 4.8 1 23 845 867 845 867 0.95
21 36 0.04 3.3 8.4 5.7 1 23 871 894 871 894 0.97
22 36 9.2e-05 0.0076 16.7 2.6 1 23 900 922 900 922 0.96
23 36 0.00058 0.048 14.2 2.3 5 23 929 947 928 947 0.97
24 36 3e-05 0.0025 18.2 2.0 2 23 953 974 952 974 0.97
25 36 0.00027 0.023 15.2 2.7 1 23 980 1003 980 1003 0.98
26 36 0.00029 0.025 15.1 1.3 2 23 1012 1033 1011 1033 0.92
27 36 0.01 0.87 10.2 5.5 1 23 1037 1059 1037 1059 0.96
28 36 1.8e-06 0.00015 22.0 1.4 2 23 1066 1087 1065 1087 0.97
29 36 1.4e-06 0.00011 22.4 1.3 2 23 1102 1123 1101 1123 0.96
30 36 0.00025 0.021 15.3 1.0 1 21 1129 1149 1129 1152 0.90
31 36 0.012 0.99 10.0 2.1 1 22 1158 1179 1158 1179 0.95
32 36 0.0041 0.34 11.5 3.1 1 23 1186 1208 1186 1208 0.97
33 36 7e-05 0.0058 17.0 1.5 1 23 1214 1236 1214 1236 0.98
34 36 0.014 1.2 9.8 1.1 2 23 1243 1264 1242 1264 0.96
35 36 0.0059 0.49 11.0 6.2 1 23 1268 1291 1268 1291 0.97
36 36 0.00026 0.022 15.3 0.1 1 23 1297 1319 1297 1319 0.98

Sequence Information

Coding Sequence
ATGTATTCCGGCCAAAAtgtagttcaaaattttAATGGAAACAACCAATATCAATACTCATGCAATGAAGAAATACCGAAAATCAAGGTAGAAAGGGAAGACGATTATGAGGATGCGgtaaatgatgaaaatgacTTTCATTACCAAagcgacgacgacaacgttGCCTACCAAGTTAACCCTGAACAGGAATCAAATATTTCTGAAGAAGAACACGATTTATCTGCAGCTGATAAATTACAGgatttcttcaaaaatgaaggaatACGGTTACCGCGTGGAACAGAAATTCTTATCGCTCCTACGAAATCTTCGAGTGGTGCGTGCGACGATGACGATGCGGACGACTCGGATTCCAGCGATGTGGCCGCATTTGTCTCGACGGCTGAATATCGGCCACTCGATGCGAACGTGGAAGACGACTCGTCACACTCGGTGccaaaattagagaaaaattacccCTGTTCCTTGTGCGATAAGGCTTTTAGTACGAAACGTTATCTAGAAACGCATATTCGTTTACATACGCTGGAATCGCTACCAGAACACCAGCTGAGCTTGGAACGTGAACTCGACCTGCATCGAGAGTCGTTAAACGCGTTACCGTCGATCAATTCTTCACCGGGAGCATTCGTTTGTCCCGTTTGCGATAAAACCTTCCTCATGAAACGTTACCTATCGAACCATCTACGATCGCATAACATGAAATTAGTCGAATCGGACCCGAACTTCAATGGCGAATCGTACACTTGTCAACAATGTCAAAAATCGTACACAAAGAAGGCTTCGTTTATCGCTCATATGAAAGCGCACGACGACAGACCGTTCAAATGTGAAATATGTAATCGTCTGTTTCGCGAGATGAATTCGCTAAACGTGCATCGATCCTTACATTCCTCTAATTCAAAACACCAGTGTACCGTTTGCGGCCTATATTTCAAATTCCGATCTCAGCTCAAGATTCACGAATGGACCCACAGCAATAACAAATTCACTTGTAAACTctgtggtaaaatttttcgtaattatttttcgtgtaaGAGTCACGAAAATCACCACGTAAACGGTAAACAGTTCACATGTTCCTTTTGcgataaaactttcaaatacaAGGTCGCCTTGAAAACGCACGCATTAACCCATACCAGACCTTACAAGTGCGATTCGTGCATTCGTACATTTGATAATCCCGTCAAACTGCAAAACCACAAGAAAACCCATTTattcgagaaatttcaaatgaatatttcCGAAGGTAATAACGATCCTTTGGCTTCGAACGAAAACGTATATGTTAAGCTGGAGCCTGACGACGAGTACCCCGAGAATTGTACTGATTCGCATTCGCCTGTCAGACTCGAACAATCCATCGACCAAGAGGAGATTAACTTTTTATCGGATTGCGATCCTTACGACGATTCAAGCAAGACAGAAACCGTCGTCGATGATTGTTTAGTGGAGAATTTGCAGTTACATTTTCTGGAAGGTGGTGGAAACGAAGGCGGTGAGACTAACGTAAGGGATTCGAAACACTGTGATGAGAAATCCGAGCTACCTTTGTACTCTTGTCAGTATTGCCAGGTCGATTTCAAGTTGCTGGAGGAGTACCAAGGTCATATGGGTTCCCATCAGGGAAGCCTAGACTTGCACTGTAAACATTGTGGGCAGGCTTTCAAACGGTtcaagaaattggaaaagcaTTTGCGCAAACACAACGAGTACAAATGCGAAAGATGtataaaaagtttcgaaacCGAAGCTGAACTTTTACAGCATACGATCTACCATAAAGACGAATCGTTCAAATGCAACTATTGCGATAGTATGTTTACCAATAAGTACACCTTGCAGTACCATATAAAACGCCATTTGAAACGTTACCGTTGCAAGTACTGCCCGAAAAGTTTCGATAACGAAGGTGAACTCGAGACGCACATTAACAGTCACCAATCCGTATACAAGTGCGATTACTGCGacaaagatttcaaattcaattcattattgatgaatcatttgaaaatacatactaGACAGTTTAAATGCGACAAGTGCGACAGATCGTTCGATAAAAGTGTCACGCTGTCTAGACACCAGAGAAACGTGCACGCGCCGACCCCGTTCATTTGTCACATCTGCGAACGATCGTTTAACTACGAATCGACCTTCAATTCGCATTTACGTAACCATAATCGTCAATTCCAGTGCGTCTATTGTCTGCGTAGCTTCGACGACGAGCACTGCTACAACAAGCATATACGCCGCCATGAAATGAAGTTTACCGAGTTCAAATGCGAAAAATGcgacaaaaagtttaaatattaTTCGCAGCTTCAGGTGCATATTAAAAATCACGGCAACGTGTATCGCTGCGACGAGTGTCAGATCGAATTGAAGCACTGGAAGAGTTACGAGAAACACAAAAGAGTAATGCACAGTACCGAAGCTCCGTCTACTTCCTCGGAACCGGCTTCGGAAACACCGGAAACCGCAGCGAGTGGCGAAAAGGCAACGACAACGTCGAAGAGTAACTCGCACAAATGTCCCAAATGCAGCAAACAGTTCAGGTACCAGTCGCAGTTATTGTTTCACgttaaaaaccacaaaaacgTGCACCGCTGCGACCAATGCGAGTTGCAATTCAAAAACTACCGTTGTTACCAGAAACACGTACGAGTTGTGCACGAACAAAGTCAAGAATTCGCTTGCACCCAATGCGACGCTAAATTCAAATACCAGAGTCAGCTGAAACACCATGTCGAATCGCACAACCGCAAATACGCCTGCGAATGCGGCAAAACGTTCAATTCGAAGAAGTACTTTATGAGTCACCAGCAGACGCACACCATCGAAAGCCTAAAATGCGACTACTGCGAAAAAGAATTCAAGTACTATTCGACCCTGAAGTTACACCTCAAGTCGCACCAGAAGGAATGCACTTTTCAATGCTTCCACTGCGAGcgtatctttaaaaataagtggAAAATACAACGTCACATCGAGACTGTACACTCGCCCGTGAAAAAAGCCAACCTCGTTTGCCAGACTTGTAACAAAACGTTCAAATACCTGTCGCAGCTCAAGCTACATTCTGCTCAGCACGAGAAAACGTACTCGTGTAACATCTGCAATCGTTCTTTCAACAACAAACGGTATTTCcggtttcacaaaaataaacacgcCAACGCCTCAGCTCAGACCTGCACTCAGTGCGGCGAATCCTTCAAATACAATTCTCAACTACGTGTGCATCTGAAATCGCACGCCTctgttaaaaatcaaagttgtagaacgCAGTGCTCGTGGAATTGCAATCTGTGCGGCAAAAGGTTTAAATTTCGCTCACTCCTCAAGAACCACATGATGATCCACGAAGGAGTGAAACCCTACCAGTGCACGTACTGCGGCAAACGATTCGCTTGGAAGAGCAGCTTACAAATTCATTCGTCTTTCGTACACAAACACAAGACTAATTTCTATTGCGAATCGTGCGACCGGTACTTCTTCTACGAAAGTCAATACAAACAACATATGTCCACTTGTCTATGGGATGTCTCGTTTAACTGCAAATACTGCGACAAGCAACTGAAATCCCGTAAAACCTACGAGTTACACCTACTCAAACACGAAGGCACCAAGGAGTTCATTTGCGCGCATTGCGAAAAAGCCTTCTATACTAAACAAGTGCTCCTCAACCACATTAGAACCCACCTCGAAAGAGAAACCAAATCGTGCCCCATTTGCAACCAACAATTTACCAGCGAATTTCGCTACAACAGTCACGTGCAAAATCACTACGACGAGTTCAGATGCGATATTTGcgataaagttttcaaatgcaAGTATAAAATGAAGCGACATTTTATGACCACCCACCAACCTAATTCTACCTACTCGTGTCCACTTTgcggtaaattatttttacgcgaAAGTGCCCTGATTAATCATCAAGCTACTCATTTCGCAGCAGCTGTTACCGCCGATGCAGATGCCCAAGACGATAAAGGAGCCAAAACACCCTACGAACAGCTCGAAACGTGCGACGACCAAGTGCCGGAAAAGTATCTTCCAAATGTCGAAGAGATCGATTGTAGACCGGATCTTTCGGAGCTGGGAATTTTGGTTCCAGAAGTGATTTacgaaaaccatttttaa
Protein Sequence
MYSGQNVVQNFNGNNQYQYSCNEEIPKIKVEREDDYEDAVNDENDFHYQSDDDNVAYQVNPEQESNISEEEHDLSAADKLQDFFKNEGIRLPRGTEILIAPTKSSSGACDDDDADDSDSSDVAAFVSTAEYRPLDANVEDDSSHSVPKLEKNYPCSLCDKAFSTKRYLETHIRLHTLESLPEHQLSLERELDLHRESLNALPSINSSPGAFVCPVCDKTFLMKRYLSNHLRSHNMKLVESDPNFNGESYTCQQCQKSYTKKASFIAHMKAHDDRPFKCEICNRLFREMNSLNVHRSLHSSNSKHQCTVCGLYFKFRSQLKIHEWTHSNNKFTCKLCGKIFRNYFSCKSHENHHVNGKQFTCSFCDKTFKYKVALKTHALTHTRPYKCDSCIRTFDNPVKLQNHKKTHLFEKFQMNISEGNNDPLASNENVYVKLEPDDEYPENCTDSHSPVRLEQSIDQEEINFLSDCDPYDDSSKTETVVDDCLVENLQLHFLEGGGNEGGETNVRDSKHCDEKSELPLYSCQYCQVDFKLLEEYQGHMGSHQGSLDLHCKHCGQAFKRFKKLEKHLRKHNEYKCERCIKSFETEAELLQHTIYHKDESFKCNYCDSMFTNKYTLQYHIKRHLKRYRCKYCPKSFDNEGELETHINSHQSVYKCDYCDKDFKFNSLLMNHLKIHTRQFKCDKCDRSFDKSVTLSRHQRNVHAPTPFICHICERSFNYESTFNSHLRNHNRQFQCVYCLRSFDDEHCYNKHIRRHEMKFTEFKCEKCDKKFKYYSQLQVHIKNHGNVYRCDECQIELKHWKSYEKHKRVMHSTEAPSTSSEPASETPETAASGEKATTTSKSNSHKCPKCSKQFRYQSQLLFHVKNHKNVHRCDQCELQFKNYRCYQKHVRVVHEQSQEFACTQCDAKFKYQSQLKHHVESHNRKYACECGKTFNSKKYFMSHQQTHTIESLKCDYCEKEFKYYSTLKLHLKSHQKECTFQCFHCERIFKNKWKIQRHIETVHSPVKKANLVCQTCNKTFKYLSQLKLHSAQHEKTYSCNICNRSFNNKRYFRFHKNKHANASAQTCTQCGESFKYNSQLRVHLKSHASVKNQSCRTQCSWNCNLCGKRFKFRSLLKNHMMIHEGVKPYQCTYCGKRFAWKSSLQIHSSFVHKHKTNFYCESCDRYFFYESQYKQHMSTCLWDVSFNCKYCDKQLKSRKTYELHLLKHEGTKEFICAHCEKAFYTKQVLLNHIRTHLERETKSCPICNQQFTSEFRYNSHVQNHYDEFRCDICDKVFKCKYKMKRHFMTTHQPNSTYSCPLCGKLFLRESALINHQATHFAAAVTADADAQDDKGAKTPYEQLETCDDQVPEKYLPNVEEIDCRPDLSELGILVPEVIYENHF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00194591;
90% Identity
iTF_01150627;
80% Identity
-