Pmar019314.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Paracoccus marginatus
Gene Symbol
-
Assembly
GCA_900065295.1
Location
FIZT01053674.1:400-4986[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 36 6.9e-07 5.5e-05 23.6 0.7 1 23 153 175 153 175 0.98
2 36 0.00019 0.015 16.0 0.9 1 23 211 233 211 233 0.98
3 36 2.2e-05 0.0018 18.9 1.5 1 23 249 271 249 271 0.98
4 36 0.011 0.88 10.4 0.6 1 23 276 298 276 298 0.97
5 36 0.0021 0.17 12.6 1.9 1 20 304 323 304 326 0.92
6 36 1.1 86 4.1 8.4 1 23 331 353 331 353 0.93
7 36 2e-05 0.0016 19.0 2.4 1 23 359 381 359 381 0.98
8 36 0.0012 0.095 13.4 3.4 1 23 385 407 385 407 0.98
9 36 0.028 2.2 9.1 0.5 1 23 521 543 521 543 0.97
10 36 5.1e-05 0.0041 17.7 4.8 2 23 550 571 549 571 0.96
11 36 0.011 0.86 10.4 0.4 1 23 574 596 574 596 0.97
12 36 1.8e-05 0.0014 19.2 3.9 1 23 601 623 601 623 0.99
13 36 5.3e-07 4.2e-05 24.0 0.6 1 23 627 649 627 649 0.99
14 36 1.9e-06 0.00015 22.3 1.8 1 23 653 675 653 675 0.99
15 36 1.5e-05 0.0012 19.4 1.9 1 23 679 702 679 702 0.97
16 36 5.2e-05 0.0041 17.7 3.3 1 23 707 729 707 729 0.98
17 36 0.005 0.4 11.5 6.1 1 23 733 755 733 755 0.99
18 36 2.1e-06 0.00017 22.1 3.4 1 23 762 784 762 784 0.98
19 36 0.0061 0.48 11.2 2.2 1 23 788 811 788 811 0.97
20 36 0.00026 0.02 15.5 6.0 1 23 847 869 847 869 0.97
21 36 0.003 0.23 12.2 3.1 1 23 873 896 873 896 0.97
22 36 0.00019 0.015 15.9 2.4 1 23 902 924 902 924 0.96
23 36 0.00047 0.038 14.7 2.5 5 23 931 949 930 949 0.97
24 36 1.6e-05 0.0013 19.3 2.0 2 23 955 976 955 976 0.98
25 36 0.00012 0.0092 16.6 2.8 1 23 982 1005 982 1005 0.98
26 36 0.00023 0.018 15.7 3.7 1 23 1013 1035 1013 1035 0.93
27 36 0.053 4.2 8.3 4.8 1 23 1039 1061 1039 1061 0.94
28 36 4.5e-07 3.6e-05 24.2 1.8 2 23 1068 1089 1067 1089 0.97
29 36 1.7e-06 0.00013 22.4 1.3 2 23 1104 1125 1103 1125 0.96
30 36 0.0003 0.024 15.3 1.0 1 21 1131 1151 1131 1154 0.90
31 36 0.014 1.1 10.0 2.1 1 22 1160 1181 1160 1181 0.95
32 36 0.0049 0.39 11.5 3.1 1 23 1188 1210 1188 1210 0.97
33 36 8.5e-05 0.0067 17.0 1.5 1 23 1216 1238 1216 1238 0.98
34 36 0.017 1.3 9.8 1.1 2 23 1245 1266 1244 1266 0.96
35 36 0.0072 0.57 11.0 6.2 1 23 1270 1293 1270 1293 0.97
36 36 0.00031 0.025 15.3 0.1 1 23 1299 1321 1299 1321 0.98

Sequence Information

Coding Sequence
ATGTATTCCGGCCAGAATGTagtgcaaaattttAATGGAAATAACCAATACCAATACTCATGCAATGAAGAGGTACCGAAAATCAAGGTGGAAAGGGAAGACGATTACGAGGATGCggtaaatgatgaaaataattcacattACCAAAGCGACCACGACAACGTTACCTACAACGTTAACCCTGAACAAGAATCAAATATTTCTGAAGAAGAACACGATTTATCTGCAGCTAACAAATTACAGgatttcttcaaaaatgaagggaTACGGTTACCGCGTGGAACAGAAATTCGTATCGCTGGTACGAAACCTTCGAGTGGTGCGTGCGACGATGACGATGCGGACGAATCGGACTCTAGCGATGTGGCCGCATTCGCTTCGTCGGCTGAATATCCGTCGCTCGACGCGAGCATGGAAGACGACCCGTCACACCCGGTACcgaaattagagaaaaattacccGTGTTCCTTGTGCGATAAAGCTTTCAGTACGAAACGTTATCTAGAAACGCATATTCGCTTACACACGCTGGAATCGCTACCAGAACACCAGCTGAGCTTGGAACGTGAACTCGACCTGCATCGAGAATCGTTGAACGCGTTACCATCGATCGATTCTCCGCCTGGAGCATTCGTTTGTCCCGTTTGCGACAAAACCTTCCTCATGAAACGTTACCTATCGAACCATCTACGATCGCATAACATGAAATTGGTCGAATCGGATCCGAACTTCAACGGCGAATCGTACACTTGTCAGCAATGTCAAAAATCGTACACGAAGAAAGCCTCGTTTATCGCGCATATGAAAGCGCACGACGACAGACCGTTCAAATGTGAAATATGTAGTCGTCTGTTTCGCGAGGTGAATTCGCTAAACGTGCATCGATCTTTACATTCCTCCAATTCAAAGCACCAGTGTACCGTTTGCGGACTCTATTTCAAATTCCGATCTCAGCTCAAGATTCACGAATGGACCCACAGCAATAACAAATTCACCTGTAAATTCtgcggtaaaatttttcgtaattatttttcgtgcaAGAGTCACGAAAATCACCACGTGAACGGTAAACAGTTTACATGTTCCTTTTGcgacaaaactttcaaatacaAGGTCGCCTTGAAGACGCACGAATTAACCCATACCAGACCTCACAAGTGCGATTCGTGCTCTCGTACTTTCGATAATCCCGTCAAACTGCAAAACCACAAGAAAAGCCATTTATTCGAGAAATTCCAAATGAATATTTCCGAAGGTAATAGCGATCCTTTGGCTTCGAACGAAGAAGTATGCGTTAAGCTGGAGCCTAACGACGAGTACCGCGAAAATCGTACCGGTTCGCATTCGCCTGCCAGACTCGAACAATCCATCAATCAAGAGCAGATCAACTTTTTATCGCATTGTGATCCTTACGACGATTCGAGCAAGACGGAAACCGTCGTCGATGACTGTTTGGTGGACAATTTGCAGCTACATTTTCTGGAAGGTGGTGGAAACGAAGGCGGCGAGGGTACCGCGAGCGATTCGAAACACTGTGATGAAAAATCCGAGCTACCCTTGTACTCTTGTCAGTATTGTCAGGTCAATTTCAAATTGCTGGAGGAGTACCAAGGTCATATGGGTTCGCATCAGGGAAACCTAGACCTGAACTGCAAACACTGCGGGCAGGCTTTCAAACGGTTCAAGAAATTGGAGAAGCATTTACGCAAACACAACGAGTACAAGTGCGAAAGATGtataaaaagtttcgaaaCCGAAGCCGAACTTTTACAGCATACGATTTACCATAAAGACGAATCGTTCAAGTGCAACTATTGCGATAGCATGTTTACCAATAAGTACACCTTGCAGTACCATATAAAACGCCATTTGAAACGTTACCGTTGCAAGTATTGTCCGAAAAGTTTCGATAACGAGGGTCAACTCGAGACGCACATCAACAGTCACCAATCCGTATACAAGTGCGATTACTGCGACAAagatttcaagttcaattcaTTACTGATGAaccatttgaaaatacataccAGACAGTTCAAGTGCGATAAGTGCGACAGATCGTTCGATAAGAGTATCACGCTGTCTAGACACCAGAGAAACGTGCACGCGCCGACCCCGTTCATCTGCCACATCTGCGAACGATCGTTCAACTACGAGTCGACTTTCAATTCGCATTTACGTAGCCACAATCGTCAATTCCAATGCGTCTATTGTCTGCGTAGCTTCGACGACGAGCACTGCTACAACAAGCATATACGCCGCCACGAAATGAAGTTTACCGAGTTCAAGTGCGAAAAATGCGACAAAAAGTTTAAATATTATTCGCAGCTTCAGGTGCATATTAAAAATCACGGCAACGTGTATCGCTGCGACGAATGCCAGATCGAACTAAAGCATTGGAAGAGTTACGAGAAACACAAACGACTGCTACACAGTACCGAAGCTCCGTCTACCTCTTCGGAAACAACGGAAACCGCAGCGAATAGTGAATCGGCAACGGCAACGCCAACGCCAGCGTCAACGTCGAAGAGTAACTCGCATAAATGTCCCAAATGCAACAAACAGTTCAAATACCATTCGCAGCTGCTGATTCACgttaaaaaccacaaaaacgtACACCGTTGCGATCAGTGCGAGTTGCAATTCAAAAACTACCGATCTTACCAGAAACACGTACGAGTTGTGCACGAACAAAGTCAAGAATTCGCTTGCACCCAATGCGACGCCAAATTCAAATACCAGAGTCAGCTGAAACACCACGCCGAATCGCACAACCGCAAGTACGCCTGCGAATGCGGCAAAACGTTCAATTCGAAGAAGTACTTCACGAGTCACCAGCAGACGCACACCATGGAAAGCCCGAAATGCGACTACTGCGATAAAGAATTCAAGTACTATTCTACCCTGAAGTTGCACCTCAAGTCGCACCAGAAAGAATGCACCTTTCAATGCTTCCATTGCGAGCGCGTCTTCAAAACTAAATGGAAAATACAACGTCACATCGAGACCGTACACTTGACCGCGAAGAAAACCAACCACGTTTGCCAGACTTGTAACAAAACATTCAAATACCAGTCGCAGCTCAAGCTACATTCGGCTCAGCACGAGAAAACGTACTCGTGTACCGTCTGCAATCGTTCTTTCAACAACAAACGGTATTTCCtgtttcacaaaaataaacacgCCAACGCTTCGGCTCTGACCTGCACTCAGTGCGGCAAATCCTTCAAATACAACTCTCAACTACGCGTGCATTTGAAATCGCACGCCTCGGCTAAAAATCAAGCTTGCAGAACGCAATGCTCGTGGAATTGCAATCTGTGCGGTAAACGGTTTAAATTCCGGTCGCTGCTCAAGAACCACATGATGATCCACGAAGGTGTGAAACCCTACCAGTGCACCTACTGCGGCAAACGATTCGCTTGGAAGAGCAGTCTACAAATTCATTCGTCTTTCGTACACAAACACAAGACTGATTTCTATTGCGAATCGTGCGACCGGTACTTCTTCTACGAAAGTCAGTACAAGCAGCATATGTCCACCTGCCTATGGGATGTCTCGTTCAACTGCAAGTACTGCGACAAGCAACTGAAATCGCGTAAAACCTACGAGTTACATCTGCTCAAACACGAAGGCACCAAAGAGTTCATTTGCGCGCATTGCGAGAAAGCCTTCTATACTAAACAAGTCCTCCTCAACCATATTAGAACCCACCTCGAAAGAGAGACCAAATCGTGCCCGATTTGTAACCAACAATTCACCAGCGAATTTCGGTACAATAGTCACGTGCAAAACCACTACGACGAGTTCAGATGCGATATCTGcgataaagttttcaaatgcAAGTATAAAATGAAGCGACATTTTATGACCACCCACCAGCCTAATTCAACCTACTCGTGTCCACTCTGCGGTAAATTGTTTTTACGCGAAAGTGCCCTGATCAATCATCAAGCTACCCATTACGCAGCCGCTGCCGCCGCCGATGCGGACGCGCCCCTAGACGATAAAGTAGCCAAACCACCGTACGAGCAGCTCGAAACGTGCGACGACCAAGTGCCGGAAAAGTACCTTCCAAACGTCGAAGAGATCGATTGTAAGCCGGACCTTTCGGGACTAGGAATTTTGGTTCCAGAAGTGATTTAcgaaaaccatttttaa
Protein Sequence
MYSGQNVVQNFNGNNQYQYSCNEEVPKIKVEREDDYEDAVNDENNSHYQSDHDNVTYNVNPEQESNISEEEHDLSAANKLQDFFKNEGIRLPRGTEIRIAGTKPSSGACDDDDADESDSSDVAAFASSAEYPSLDASMEDDPSHPVPKLEKNYPCSLCDKAFSTKRYLETHIRLHTLESLPEHQLSLERELDLHRESLNALPSIDSPPGAFVCPVCDKTFLMKRYLSNHLRSHNMKLVESDPNFNGESYTCQQCQKSYTKKASFIAHMKAHDDRPFKCEICSRLFREVNSLNVHRSLHSSNSKHQCTVCGLYFKFRSQLKIHEWTHSNNKFTCKFCGKIFRNYFSCKSHENHHVNGKQFTCSFCDKTFKYKVALKTHELTHTRPHKCDSCSRTFDNPVKLQNHKKSHLFEKFQMNISEGNSDPLASNEEVCVKLEPNDEYRENRTGSHSPARLEQSINQEQINFLSHCDPYDDSSKTETVVDDCLVDNLQLHFLEGGGNEGGEGTASDSKHCDEKSELPLYSCQYCQVNFKLLEEYQGHMGSHQGNLDLNCKHCGQAFKRFKKLEKHLRKHNEYKCERCIKSFETEAELLQHTIYHKDESFKCNYCDSMFTNKYTLQYHIKRHLKRYRCKYCPKSFDNEGQLETHINSHQSVYKCDYCDKDFKFNSLLMNHLKIHTRQFKCDKCDRSFDKSITLSRHQRNVHAPTPFICHICERSFNYESTFNSHLRSHNRQFQCVYCLRSFDDEHCYNKHIRRHEMKFTEFKCEKCDKKFKYYSQLQVHIKNHGNVYRCDECQIELKHWKSYEKHKRLLHSTEAPSTSSETTETAANSESATATPTPASTSKSNSHKCPKCNKQFKYHSQLLIHVKNHKNVHRCDQCELQFKNYRSYQKHVRVVHEQSQEFACTQCDAKFKYQSQLKHHAESHNRKYACECGKTFNSKKYFTSHQQTHTMESPKCDYCDKEFKYYSTLKLHLKSHQKECTFQCFHCERVFKTKWKIQRHIETVHLTAKKTNHVCQTCNKTFKYQSQLKLHSAQHEKTYSCTVCNRSFNNKRYFLFHKNKHANASALTCTQCGKSFKYNSQLRVHLKSHASAKNQACRTQCSWNCNLCGKRFKFRSLLKNHMMIHEGVKPYQCTYCGKRFAWKSSLQIHSSFVHKHKTDFYCESCDRYFFYESQYKQHMSTCLWDVSFNCKYCDKQLKSRKTYELHLLKHEGTKEFICAHCEKAFYTKQVLLNHIRTHLERETKSCPICNQQFTSEFRYNSHVQNHYDEFRCDICDKVFKCKYKMKRHFMTTHQPNSTYSCPLCGKLFLRESALINHQATHYAAAAAADADAPLDDKVAKPPYEQLETCDDQVPEKYLPNVEEIDCKPDLSGLGILVPEVIYENHF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00194591;
90% Identity
iTF_01472618;
80% Identity
-