Trut008376.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- -
- Assembly
- GCA_029784135.1
- Location
- CM056647.1:132491551-132492793[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3e-06 0.015 17.0 0.0 26 48 33 55 29 57 0.94 2 3 0.00061 7 8.5 0.2 25 48 75 97 69 101 0.85 3 3 0.023 2.7e+02 3.4 0.3 21 51 99 129 94 131 0.84
Sequence Information
- Coding Sequence
- ATGAAACCGAAGAAGTACAAGTGCAAAGACTGCGACAAGAGTTTCGCCGCCTGGAAGTCGCTAACGATGCACAACCATATCCACAAGGGCCTCACCAAGTGTACGATCTGTGGTGCGATACTTTCAAGGACGGCCAATCTCAAGCGGCACATGAAGCTGAAACACGACAAGGTGATTCTCAAAGTGGACGAAGGACAGAATATTGTTAGTACAAACAAGTGGTCCCAATGTCAAATCTGTAAATTGGTCATAACATCGGTAAATCTTTGGCGACACATGCGAACCCAGCACACGAATCAAGAGCCGAAAAAATGCGATAAGTGCAACAAACAGTTTAAGAATAAGTACAGCCTCCGGGAGCACGTGCGTATGGCtcacgaaaacaagcaacatcCCCATCATCAAACGTCGCAATCGTGCGCCGACGATGCAGCCGAAGAGTTGTCCCCGCGAACTAGCTCGCTGGCAATGGGTCCGGTTCTGGAGGAAACCAGCCCGGGGGTATCGGATGACGCTGCTTCGGCCACTGGACTGACCGTGTTGTCTGCGGCTCAGCTTGCATCTGCATCCACGATGAAGCTGTTCTGA
- Protein Sequence
- MKPKKYKCKDCDKSFAAWKSLTMHNHIHKGLTKCTICGAILSRTANLKRHMKLKHDKVILKVDEGQNIVSTNKWSQCQICKLVITSVNLWRHMRTQHTNQEPKKCDKCNKQFKNKYSLREHVRMAHENKQHPHHQTSQSCADDAAEELSPRTSSLAMGPVLEETSPGVSDDAASATGLTVLSAAQLASASTMKLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01471693; iTF_01471959;
- 90% Identity
- iTF_01471693; iTF_01471959;
- 80% Identity
- iTF_01471693; iTF_01471959;