Trut027871.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- -
- Assembly
- GCA_029784135.1
- Location
- CM056648.1:257762695-257772078[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0012 14 7.5 0.1 21 43 148 170 141 179 0.86 2 8 0.0034 39 6.1 0.1 23 47 178 202 174 208 0.83 3 8 0.0075 87 5.0 0.1 23 48 206 231 202 236 0.85 4 8 0.002 23 6.9 0.1 23 49 234 260 232 265 0.85 5 8 0.0049 56 5.6 0.0 23 51 262 290 259 292 0.85 6 8 0.036 4.1e+02 2.8 0.0 21 46 288 312 286 318 0.87 7 8 0.0013 15 7.4 0.1 24 45 319 340 315 344 0.90 8 8 0.35 4e+03 -0.3 0.1 14 37 420 443 413 451 0.79
Sequence Information
- Coding Sequence
- ATGATTCAATATTTTTATCCTTTACAGCAACCAACTTTCGAAGATGGAGTGATCGAACTTGCCCGTCCAGAGATGCTGGCCCAGATCCCTCTGAATGACAATAAGAACTCATTAGCAATGTCACTTGATCGTTTGTCTGACAACAAACATTCCCTAGCGATGTCACTTGATCGGCTAAATGACAATAAGCATTCGCTAGCGATGTCACTGGACCGATTGACTGATAACAAACATTCGCTTGCCGTCTCGCTCTCTCTGGGGAATACGCTACTTAATCTGAACAAAGTCAAATGTCCACAATGCAGAAAGCGCTTCGATACGATGGAAGAGATGCAACAGCATCGCACCAAGCATCTGACGGAAAATAAGTTCAAGTGTGAAATATGCAGCAAGGAATTCCCTAGTCATAGTTCGATGTGGAAGCATACCAAAGCTCACACTGGCGAGCGTCCATTTGTCTGCCAGATTTGTAACAAGGGCTTCACGCAACTAGCGAACTTGCAGCGACATGATCTCGTACACAATGGATTGAAGCCATTCAAATGTCCGATTTGCGAAAAGAGTTTTACGCAGCAGGCTAATATGTTGAAGCATCAACTTCTGCATACCGGACTTAAACCATACAAATGTCCTGTGTGCGAAAAAGCGTTTTCTCAACATGCCAACATGATAAAACATCAGATGCTTCATACAGGTTTGAAGCCTTATAAATGCCCAGTGTGCCATAAGGCTTTCACCCAACACGCCAACATGGTTAAACATCAGATGCTTCATACTGGTTTAAAACCGTATAAGTGTCCCGTTTGTGATAAAGCATTTACTCAACAAGCAAATATGGTTAAGCATCAAATGCTACACACCGGTGAAAAGCCGTTTAAATGCAAGAGCTGTGATAAAGCATTCTCACAACGTGCCAATCTCAAAAAGCATGAAATGGTCCACCTCGGAATTCGTCCGCACCTATGTCCGTTGTGCTCTAAATCCTATTCGCAGTATTCGAATCTGAAAAAGCATCTACTGGTCCACCAGAAACAATCGTTGAAACAGCAACAACAGAATGGCCAGGTCATGGTgaTTCTATACAATTGCCAAACATGCAAAATGCAGTTCGAGAATATTCTTGAATTTGAGCGCCATACCAGGCAATGCAATGTGTTAAACAATGGTAACCACGCTCTGAAGTTGGAAAGTATTAACATAAAGAGTGAAATTGACACCGATGGAAGTTCAAATCCGGGAATGCCACAACACATTACGGTGCCTCATAGCCAGTCTCAGTCTCAAATGCACATCCCATCTGCGATATTGACATCGGTGATCTCCTCTTCGGCGGCTGTGACCAATGCTCACATCTTGAGCACTACTCATGCCAACCATCATTCTAGTGGTCATCCGCAGCATCCTCAACATCCCCAGCAGCAGCATACACCACCAACGGTAACAGTGCAAcatcagcaacagcagcaacaacaacaatcagCTGCTCATCAGCAGCAGATCCCTTCCATAACTCACCAACAGCACACGTCCCTCCAGCAGCAGCATAATCTGCCGATACATCTGCAGCAACAGCTATCCCACCACCTAATTTCCTCCCATCTTCCCCACCAGGATCATGGCTCGAATGATCTCCACCATCAAGTCAATTTCCATCATCCGCACATACCACATATCTCCAATTTACCTCATAAGATCCTGTCTCCTCTATTCCATATTCCTCCCTTTAACAATAACCATGGTACATAA
- Protein Sequence
- MIQYFYPLQQPTFEDGVIELARPEMLAQIPLNDNKNSLAMSLDRLSDNKHSLAMSLDRLNDNKHSLAMSLDRLTDNKHSLAVSLSLGNTLLNLNKVKCPQCRKRFDTMEEMQQHRTKHLTENKFKCEICSKEFPSHSSMWKHTKAHTGERPFVCQICNKGFTQLANLQRHDLVHNGLKPFKCPICEKSFTQQANMLKHQLLHTGLKPYKCPVCEKAFSQHANMIKHQMLHTGLKPYKCPVCHKAFTQHANMVKHQMLHTGLKPYKCPVCDKAFTQQANMVKHQMLHTGEKPFKCKSCDKAFSQRANLKKHEMVHLGIRPHLCPLCSKSYSQYSNLKKHLLVHQKQSLKQQQQNGQVMVILYNCQTCKMQFENILEFERHTRQCNVLNNGNHALKLESINIKSEIDTDGSSNPGMPQHITVPHSQSQSQMHIPSAILTSVISSSAAVTNAHILSTTHANHHSSGHPQHPQHPQQQHTPPTVTVQHQQQQQQQQSAAHQQQIPSITHQQHTSLQQQHNLPIHLQQQLSHHLISSHLPHQDHGSNDLHHQVNFHHPHIPHISNLPHKILSPLFHIPPFNNNHGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01471718;
- 90% Identity
- iTF_01471718;
- 80% Identity
- iTF_01471718;