Trut049408.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- MBD2
- Assembly
- GCA_029784135.1
- Location
- CM056649.1:294304068-294312896[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.7e-24 9.7e-20 71.6 0.0 1 75 5 74 5 76 0.93 2 2 7.2e-05 1 10.6 0.0 29 74 130 183 88 186 0.86
Sequence Information
- Coding Sequence
- ATGAATGTATCAATCGAGCGGAAACGAACCGACTGTGCCACTTTACCGAAAGGCTGGCAACGAGAAGAAGTCCTTCGAAAAACCGGACTGTCCGCAGGAAAGGTGGATGTATACTATTACAGTCCGAATGGTAAGCGGATCGAGAGCAAACCTCAGCTGGCCCGGGCCCTTGGGGATACAATTGATCTGTCCACTTTCGATTACCAAGCCGGACGTACCGTCCCCACCGCAACACACATGATGTTGCAGCACAATGCTCTCAAGCGAAAGTTGGTGCCGCCGACGAGTGGGTCAGTGCCACCACCACCGGTTCCAATTTACCACCAGATAACAACGGGAGCGGCGGCAGGaagacagcagcagcagcagtttgACTACAGCCGTGGTATGCGAGCGGATACTTCGCTTATTCCCCCGATTCGCCAGACGGCATCTATTTTCAAACAGCCGGTCACCGTTGTGCGTTCACAAGAGGGAGAGGTTAAACGAGATTTGCAACACGGTAAGCAAATCAAACCGAAGCAGTTGTTCTGGGAGAAGCGATTAGAGAATCTGCGCGCTAACAACGTGTTCAACGAGGAAATTGGCTCGCTGGAGCTCCCGAAGCGTTTGCGAGCTGTGGGACCGGGAGTTAACGAAGCCACCGTCCTCCAATCGCTGGCAACGGCGCTTCACCACAACACCCATCCGGTTACGGGCCAAACCGCGTCAAAAACGTCACTCAACACGAGCGCCGGTGTGTTTCTGAATCCGGACCAGCCACTGATGCATGTGGCTACCATTACCGAGGATGACATCAAAAAGCAAGAGGAACGAGTCCAGTACGCCCGATCGCGACTGCAAGAAGCTCTTCGAACATAG
- Protein Sequence
- MNVSIERKRTDCATLPKGWQREEVLRKTGLSAGKVDVYYYSPNGKRIESKPQLARALGDTIDLSTFDYQAGRTVPTATHMMLQHNALKRKLVPPTSGSVPPPPVPIYHQITTGAAAGRQQQQQFDYSRGMRADTSLIPPIRQTASIFKQPVTVVRSQEGEVKRDLQHGKQIKPKQLFWEKRLENLRANNVFNEEIGSLELPKRLRAVGPGVNEATVLQSLATALHHNTHPVTGQTASKTSLNTSAGVFLNPDQPLMHVATITEDDIKKQEERVQYARSRLQEALRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00948753;
- 90% Identity
- -
- 80% Identity
- -