Trut023280.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- -
- Assembly
- GCA_029784135.1
- Location
- CM056648.1:180876654-180894311[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.7 1e+03 1.1 0.0 14 26 446 458 439 459 0.86 2 5 4.5e-10 2.8e-07 31.8 0.0 2 39 500 538 499 542 0.90 3 5 2.7e-11 1.7e-08 35.7 0.1 2 39 554 591 553 594 0.94 4 5 4e-17 2.5e-14 54.3 0.0 3 45 610 653 608 653 0.97 5 5 2.8e-16 1.7e-13 51.6 0.0 1 43 660 703 660 704 0.96
Sequence Information
- Coding Sequence
- ATGCTGCACGAAGACGACGTTCCTTGGCGTATATTGTTCAATTCCAAGATGGACATCCTGGTACTTCCAGGTCCAGCATTGACCCGAACACACCAAGTCGCTCAAGAACTGGCCCGGAGTCTATTACGAACGGCTGAGCAGCTCAAAATCAAAGGATTGTGCGAGGTAGGAGAACCTCAGTACGAACAGGACTACTCCCCCTCTATCAAGCGCTATAAACCATATCGTTCACGATCGCCAGACAATCGTCACCCACCTCCCTCCGGATCGCAGCAACCATCGGCGAACTCCCGGAACAGTTCTTCGTCCACCTCACAGAGCAACAATAACCAAAGCGGGCAGGATTCCAAAAGTGGCCACAAATCGTCGTCTGGCAGGAGCTACAATAGCAATTCCGAATCGGCCCAGGCTGATAATGGATCGTCGCCTATAGTCGTCTTAGAATCACGTGATTTAACTTCGACACCGGGCAAAGAAAGAAAAGGCAAAATGACGAGTCTTGGGATGGGAGTCGGAATAAACGGATCTGTAATGGGCGTTTCCATGGGTTATCTGGATTTTGCTCCTGAGCCTCCGGCTCCAACGGCGACGCCAGTGACAGAACATGTTGACATCAATTGTGCTCCTAGCCATGATACGCGTGATCTGTCCAGTAAGTATTCTATTCCTAACAACGGTGACATACGGGTTAAATTCGAAACTCTCCGATCACTGGATCCGCAAGACGCAATTCAACTAGATAATCAAGTCGCCCACCAGATGCAtgcacaacagcagcagcagattcagcatcaacaaattttgcaccaacaacagcaacaacatttgttgcaacagcaccagcagcatcagcaacatcagcagcagcaacagcaacaacagcaacaacaacagcaacaacaacagcaacagcagcatcaACATCAGCAACACCAGCTTCaagtgcagcagcagcagcagagacAAGCGtctcaacagcaacagcagcagcaaacaGATCAACGGTTATCGCCTCATCAACCATCACCTCAACAAGCACCTCAACATCAACAGCATGCCCTCCTCATCGACCAACAATCACAGCACTCACACCACTCCACCCATAGTCCAGTATCGAATGCTTCCAGCTCATCGAGTCAGCATCACCCGGAGAACTTGGTTACTGTTGCTTCCAATACCACCGATAATAGCGGTCCGCTAGAGATGAAAACACGGATTACGCTGAAACAGGAAATTTTAACTGATGCCgatcagcaacagcagcagcaacaacaccaAATGGAGGTCGAACAGGATCAATCCTCGatgcatggaatggttgtaacACCGGAGATCTCCGGAATGATGAGCCAGAGTCAGATGAGcgATATCTATCAATCGGATGCCAGTGAAGACTCCAAAGTGGGCATACTGGACGGTTCGTCGATACAGTACACGAACCTGACGAGCCCGAACGCAAGTGATCCTAAAACGCCAAGTGGACCAAAGACATGGACGGCAGAGGACATGGAATCGGCGCTGGATGCACTCCGAACTCACAACATGAGTTTGACCAAGGCTTCCGCTACCTACGGTATACCGTCAACGACCTTGTGGCAAAGAGCACATCGGCTTGGTATTGATACCCCAAAGAAAGAAGGACCGTCTAAAACGTGGAACGAGGACTCGCTTAACAGCGCCCTAGAGGCACTCCGTACCGGAACGATATCGGCGAACAAAGCGTCGAAGGCATTCGGTATACCGTCTTCCACCTTGTATAAGATAGCGCGACGCGAGGGAATCCGACTTGCTGCACCCTTTAATGCTGCCCCCACTACATGGTCTGCGGAAGATCTAGATCGTGCCTTGGAAGCTATCCGTGCTGGGCAAACTTCTGTCCAGAAAGCCAGTACCGAATTTGGCATCCCGACCGGTACACTGTACGGACGCTGTAAGCGGGAAGGAATTGAGCTGTCGCGATCGAATCCGACGCCGTGGTCGGAGGATGCGATGATGGAAGCGTTAGAGTCTGTGAAGCAAGGGCACATGTCAATAAATCAGGCTGCCATCCACTACAATTTACCTTACTCTTCGCTGTACGGACGATTCAAACGTGGCAAATACGACACTCCGAGCAGTGCGAATGCGTCGCACGCTAATCACAGTGGTGGAGGAGCCGGTGGAGGTGGTAACGTCGGCGGCATCAGCGGAATAGGAGGCAATGTGGCGACATCGGCAGTGACGATGGCCGGCGTTACCAGCAGTCCACAGATGGAATTTAAAATAGAACCTCAGCATAATGAGCATAGTCCAGAGAACACGCAACATTATAACCCTGCGCTTACAACATCACTCCCAACGTCGTCTGCGCCGCCATCGACACAAAATCATCACGTCGTACCGTCACCATCGCCAGTAAATATCCACATCATAAACGCGAACCATCACCATCATCAGCTGCAGCCGACTCCACCGCCACCGCATCAAGCAGTTGCCACAACGCATCACACCACCCTCCAGGGAGCACAACCGCAGCTCATCCAGCATCACATCATTCCGCAGCAGCACCACATCATTTATCAGCAGCCGCTGCAACAACTCCAGCAGCAACCACAGTACCATCCGATGTATCACATTATCAAGCAAGAGAACGATAGGAGTTGA
- Protein Sequence
- MLHEDDVPWRILFNSKMDILVLPGPALTRTHQVAQELARSLLRTAEQLKIKGLCEVGEPQYEQDYSPSIKRYKPYRSRSPDNRHPPPSGSQQPSANSRNSSSSTSQSNNNQSGQDSKSGHKSSSGRSYNSNSESAQADNGSSPIVVLESRDLTSTPGKERKGKMTSLGMGVGINGSVMGVSMGYLDFAPEPPAPTATPVTEHVDINCAPSHDTRDLSSKYSIPNNGDIRVKFETLRSLDPQDAIQLDNQVAHQMHAQQQQQIQHQQILHQQQQQHLLQQHQQHQQHQQQQQQQQQQQQQQQQQQQHQHQQHQLQVQQQQQRQASQQQQQQQTDQRLSPHQPSPQQAPQHQQHALLIDQQSQHSHHSTHSPVSNASSSSSQHHPENLVTVASNTTDNSGPLEMKTRITLKQEILTDADQQQQQQQHQMEVEQDQSSMHGMVVTPEISGMMSQSQMSDIYQSDASEDSKVGILDGSSIQYTNLTSPNASDPKTPSGPKTWTAEDMESALDALRTHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPSKTWNEDSLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWSAEDLDRALEAIRAGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALESVKQGHMSINQAAIHYNLPYSSLYGRFKRGKYDTPSSANASHANHSGGGAGGGGNVGGISGIGGNVATSAVTMAGVTSSPQMEFKIEPQHNEHSPENTQHYNPALTTSLPTSSAPPSTQNHHVVPSPSPVNIHIINANHHHHQLQPTPPPPHQAVATTHHTTLQGAQPQLIQHHIIPQQHHIIYQQPLQQLQQQPQYHPMYHIIKQENDRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00948660;
- 90% Identity
- -
- 80% Identity
- -