Tmul001138.1
Basic Information
- Insect
- Toxonevra muliebris
- Gene Symbol
- Aef1
- Assembly
- GCA_963691655.1
- Location
- OY829326.1:4415001-4416030[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.013 1.3e+02 3.5 0.2 22 46 174 198 168 200 0.89 2 4 9e-06 0.084 13.6 0.0 21 51 201 231 198 232 0.88 3 4 0.00059 5.5 7.8 0.1 21 51 229 259 227 260 0.88 4 4 0.00013 1.3 9.9 0.1 21 47 257 283 255 290 0.88
Sequence Information
- Coding Sequence
- ATGCACATTAAGAATCTGCAGCATGCTCATGCAGCATCTGCAGCGATGGGCAATTGTGAAATTGTAATTGTTTCATCGCCGCCaaatcaaaataacaacaataacaacaatagtaataacaataatgatAACTCAACAGGAtcacatcagcagcaacaacaacaacagcagcagcagcaacaacaacaacaacaacagcaacaacagcagcatcaacaacaacctCCTACTACAACCGAAATACCATTACCATTTAATATGCATCTTTCTACTGTTAACAGCGAAGCTCACGCTGCAGCTCAAGCTGCAGCAATGGCAGCAGCACAAGCAGCTGCTGCTCAAGCAGCGGCTGCTGAACAACAAGGTGGTGGACAGCAGCACCACACCATTTTGCAGCAACATCCACTCGCCCATCTCGTTGCCACTGCGGCCAATAGTCCTGCTTTGTCGGAGCAACACTTTATCGGACGTGAAGTTGTTTCCAATGGGCACAATGGAAATGCAGCGGTGGGTGCGCCCGAAAAGCCCTTCCAGTGCAACGTATGTGAACGACGGTTTCGTCAATTGAGCACCCTAACGAATCATGTTAAAATTCATACTGGCGAGAAACCGTACAAATGCAACATTTGTGATAAGACCTTCCGGCAATCGTCGACACTTACGAATCATTTGAAGATCCATACCGGCGAGAAGCCGTTTACATGCACCTATTGTCCGAAGCATTTTCGTCAGTTGAGCACGCTCACtaaccatttaaaaattcatacagGTGAAAAACCCTTTGAATGCGCCGTCTGCAAGAAGCAATTCCGCCAGTCCAGCACTCTCAAtaatcatattaaaattcatGTCATGGACAAAGTTTATGTTCCCGTAAAGATTAAAACCGAGGAGGAAGAGGGATGA
- Protein Sequence
- MHIKNLQHAHAASAAMGNCEIVIVSSPPNQNNNNNNNSNNNNDNSTGSHQQQQQQQQQQQQQQQQQQQQQHQQQPPTTTEIPLPFNMHLSTVNSEAHAAAQAAAMAAAQAAAAQAAAAEQQGGGQQHHTILQQHPLAHLVATAANSPALSEQHFIGREVVSNGHNGNAAVGAPEKPFQCNVCERRFRQLSTLTNHVKIHTGEKPYKCNICDKTFRQSSTLTNHLKIHTGEKPFTCTYCPKHFRQLSTLTNHLKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVMDKVYVPVKIKTEEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01133176;
- 90% Identity
- iTF_01133176;
- 80% Identity
- iTF_01470803;