Basic Information

Gene Symbol
L
Assembly
GCA_963691655.1
Location
OY829328.1:91515207-91524580[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 8.1e-06 0.00064 20.7 1.7 1 23 233 255 233 255 0.98
2 19 0.67 54 5.2 5.8 1 23 261 283 261 283 0.98
3 19 3.5e-07 2.8e-05 24.9 3.1 1 23 289 311 289 311 0.99
4 19 1.6e-05 0.0013 19.7 0.3 1 23 317 339 317 339 0.98
5 19 3 2.4e+02 3.1 0.3 3 23 403 425 403 425 0.87
6 19 0.0016 0.13 13.4 0.5 3 23 459 480 457 480 0.96
7 19 0.14 11 7.3 0.7 1 23 576 598 576 598 0.97
8 19 0.013 1.1 10.5 1.5 2 23 606 627 605 627 0.95
9 19 0.0011 0.087 13.9 0.2 1 23 635 659 635 659 0.93
10 19 1.3 1e+02 4.3 0.1 1 19 664 682 664 684 0.93
11 19 2 1.6e+02 3.7 0.2 2 23 695 717 694 717 0.94
12 19 0.0082 0.65 11.2 2.7 1 23 756 778 756 779 0.96
13 19 2.4 1.9e+02 3.4 0.2 1 23 953 977 953 977 0.88
14 19 0.0015 0.12 13.5 4.6 2 23 986 1008 985 1008 0.96
15 19 0.18 14 7.0 0.1 1 23 1014 1036 1014 1036 0.92
16 19 0.55 44 5.4 0.4 2 23 1044 1065 1043 1065 0.94
17 19 0.82 65 4.9 2.3 2 23 1156 1177 1156 1177 0.94
18 19 0.033 2.7 9.3 0.0 1 20 1187 1206 1187 1209 0.94
19 19 0.12 9.8 7.5 1.4 1 23 1216 1238 1216 1238 0.96

Sequence Information

Coding Sequence
ATGATGgctttaaaaatgttatatcgTGGACCCAGCTCGAGACTTGAGAAtctaattgaaaaaatacaagCAACTAAGGAAATTATTAATACCGATATGTATTCCACACATACATCTTCCAGCTATTCACCATCTATATCTGATGGAACGATCACACCGAATTCATTGCATCAACATTTGCCAACGCATCATCAACATTTGCAGCACTTGCAAAATTTACAACACCTTCATGATTCTGCTGCTGCTATCAGCGGCGAAAGTGGAGGTGGAGTACAGATGACGGCACAGCGTCTACGCAGACAAGCCACTACTACtgctaacaacaacaataacaatacgaCTACAACTAACGGTAGTGGTGTTGACGCCACGGCTGATGACGATGAGCATGGAATGGatgataataacaaaaacattaatgagacagcaaaaaaagcaaataaaggTGTTACAGATGGTGATGCTGGTGGTGGTGACGGTGCCGCAACTGATGTCAACGTAGAACAACTTAAACGACAACAGGGTCGctttcatcgtcatcatcatcatgccGAGCATACTATGAAAATTCCAACGAAATTACGTAAAATCGATAGGGAtgcagcagcaggagcagccGGAGCAACCGCAGGGACAAAGTTTGATAAGTTGACAGCAGACggtattaaaaacaataacagcaacgcCGACGGATCCTATCAGTGTCAGTTCTGTGATAAATCATTTCCGCGACTTGGTTACTTAAAAAAGCACGAACAGAGTCATGCTGAGCATTTGCCATTCAAGTGTGACTATTGTGCGCGTCTTTTCAAACACAAACGATCAAGAGATCGTCACACAAAATTACATACCGGCGATCGACGTTATAGGTGCCCACATTGTGAAGCTGCTTTTTCGAGAAGTGACCACTTAAAAATTCACATGAAAACGCACGACAATCAAAAACCTTTTCAGTGCACAATCTGTAATCGAGGTTATAATACTGCTGCCGCTCTAACGTCACATATGCAAAACCATAAAAAGCAAGCAGCTATTTTGGCGGCTGGTGGCAATCCTCAAGCTTTGAATTATAGTCCTCGTTCTACAGGTTCAGCATCGAGTAATGGCAGCTTACATAAACGTCGGTATGCGATGGCCATTACAGCTGCAGATAGTAGTCCAGGTCGTTTAGAATATCCTAAGCGGATGCGTGCTTCATTCCTAGGTTGCAGCTACTGCACCAAATCAGACTTTAATTCATTGGAACAACTAAACGCACACGTGCAAGCAATGCATGAGAAAGAGCTGTTGCCACCGGCAGCACCACCAACTCCAAATGCACCAAATAGTAGCAGCTGTGGAAGTGCTGCAGAAATAAATGCTTTTCAATTAGCCTGTGAATATTGCACTATGAAATTTCCAAATCTACCAACGATGTTTCAGCACATGCGCACCACACACATCGATCGCTTGACAAGCCCAAATTCATATTTTGAGCACTTCAATCGCTTGGCTGCATCGGGTACTTTTAGTCCACGATTGATATCATCCAAGTctgcacaacaacaacgaaatggCTCCGAAGAGAGGCATATTAAAATAGAGCAAACCATCGCAAGCCCAAAAAGCCAAACCGATACCAAGCTAGATGAAGAGCCCACAGATTTGAGTCAAAACAAACGTCGCTTAGAAACGCCGAACATAACACCACAAAATTCTCCACACATTGCTGAGAAACCGGGTGTTTTCTTTTGCAATCAGTGCAATGCTGGCTTGCCAGATTTCGAGAGTTTTCGCAGTCACCTCAAATCACACATCGTTCAAGGACTGCAACTCGTCTGCCACCACTGCGGCTTAACGCTGCGCGAACAAACTGAGTACGAGCGCCATGTTGTCTCACACTTTCTCATCGCTAACTCCGAGTACAGTTGCGCTGGTAACTGTAATAAAACCTATGCTAAGCCTGAAGAACTACAGAAGCATCTGCTGGATCAACATGTTATTCCAATGTACAAGTGTTCACTGTGCTCCGAGTTATTTGATTCAAAGGTAGCGATTCAAGTTCACTTTGCCTGTGCACATTCTTCTGAGACTAAACTGCTGAGATGTTCTGCATGCATGGAAATATTCCGCGCGGAGTCCGACTTCAACATACACGTAAAAACGCGTCATCAGGCAACAAATGGCACCGCAACAGCGGCAAATTCGCTACAGTGTATGTTTTGCCGCACCGTTTGTTCGTCTGATCTTGAAATGCATTTTCATTTGGCAGCACATGCCCGCCAGTTTCGTTGTCCATCATGTCCAGAGACATTCCATGTGGAGTTTCTGTTGGATCGTCATATGCAAAATCATCACGGTGGCAATGAGCGCGTAACAATGGGAGGAGCGCCAGGCAAAGAAACATTCGAAGAGCACGCAAATACTGTAACTAATAACCCAATTAGTCCAATGAATTCTCTCTATGTGAATGCATTGTTGGGTAAAGCGGCGGCACCTCTAATGCCACTGGTaccacaaaataataataacagtatTCTTGATTACAATGTTGCGTTTGCGGCGCACCTAAACAAGGGACTGTTTCCAGCCAGTGCAACTAGCAAATTTTATAGCCCACTACAGGTTGATACCAATGCAATGAAGCATCCTGCTCTTATGTATGGACTTAGTCAACGTTACTTTGACACGAGTCGCACGCTAATGGATCTGTATTCCAACCACCATCAACAGGATAAGTCTGCTGTAAATACCGCCGCTGCTGCAAACTATTTCATAAGTCCCAAGCATCCAGTTACACCACATGTACACCAAGAGTCGTTAAATCGAAACTCAAACGATGGCACCAGCGCCTCCAATTCCACTTCCATTGCCGGTTTTAGTTGTGATATTTGTGAACGCAATGATTTTCGTACAGAAGCCGAAGTAAACTCGCATCGCAAAATTGTTCATAACATGAAAACGGGGGTGAGTCTACGCTGCGCCTACTGTTCGGGCAATTTTAAATCACGTAGTGAATTGGAACATCATATGAAAACATGCCATAACTCTACGGGTAAGCACAAATGCCTCATTTGTGATGAAATATTTCCATCTCCTGCCATTCTTGCCGAACACAAGTTACAACACTCGAAAGTGGGACAGTCTGGCAAATGCTCGCATTGCTCGAAGCCTTTGAATGATGTGGCAGCATTCAAGGGTCATCTGACAGAACACAACAACGAAGGGCAAATGCCGGTGCAATGCATTTGCTGTCGTCAATCGTTGCACTCGGACTTTGAAATTGGGTTACATGCGAAATTTCACACCAAGTCTTCAAACACTCCTGAAAGCGTTTGTGCACTGTGTCTTGAACCAATACCTAATGCAACCGCTGATGCCAAAGTGTGTGAAAAATGTTGTCGCAAGCATAACCtgaacaataaatacaaaaaccgTGAGAGTTACGAACGCGCTTCAGAATTACGCCataattatattgaaaatcgttgtaatcTTTGCAAAATGATATTGCCACACCAGCACAAGTTGCAAGAGCATTTGGTCGAGCATACCTTTGCTGGTTGCGAGGATCGTGGctttatttgttatatatgcTCAGCAGTATTTACAGCACCAAGTGGACTACTAAATCACATGCCCGAACATGGTTTAAATGCACGTCCCTACGATTGTAATCTTTGCACGGAAAAATACTATTTTCGCGCAGAATTAGATCATCATTTGTTGGAGCATGAATTGCGTGAGACGCAACAAGAAATGAGAGAGGGCATTGGAGGAAGATTAATggcagcaaaagaagaaaaaccaccacctccaccaccacAACAGCTCCAACCGCCAACGCTGCAATTAGTGGCTCATGCTGACCAGCAAAAATTGAGTGGAATTGGAACGGGAAATGATCTTAAAATGAGCGAGATTAAGCAAGAAATATTTGATGCAGATAATAAATCGAATATgggtggtgatgatgatgaatatATTGAAGTGGAAAATGTTCACGATATTAATCTCAaccatcaacaacagcagcagagtGGTGCACATCTCGAAGTGGAGAAGCAACAGGAGtctaaagcaacaacaacagcaattgaaGAAGAAACttag
Protein Sequence
MMALKMLYRGPSSRLENLIEKIQATKEIINTDMYSTHTSSSYSPSISDGTITPNSLHQHLPTHHQHLQHLQNLQHLHDSAAAISGESGGGVQMTAQRLRRQATTTANNNNNNTTTTNGSGVDATADDDEHGMDDNNKNINETAKKANKGVTDGDAGGGDGAATDVNVEQLKRQQGRFHRHHHHAEHTMKIPTKLRKIDRDAAAGAAGATAGTKFDKLTADGIKNNNSNADGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCDYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAAILAAGGNPQALNYSPRSTGSASSNGSLHKRRYAMAITAADSSPGRLEYPKRMRASFLGCSYCTKSDFNSLEQLNAHVQAMHEKELLPPAAPPTPNAPNSSSCGSAAEINAFQLACEYCTMKFPNLPTMFQHMRTTHIDRLTSPNSYFEHFNRLAASGTFSPRLISSKSAQQQRNGSEERHIKIEQTIASPKSQTDTKLDEEPTDLSQNKRRLETPNITPQNSPHIAEKPGVFFCNQCNAGLPDFESFRSHLKSHIVQGLQLVCHHCGLTLREQTEYERHVVSHFLIANSEYSCAGNCNKTYAKPEELQKHLLDQHVIPMYKCSLCSELFDSKVAIQVHFACAHSSETKLLRCSACMEIFRAESDFNIHVKTRHQATNGTATAANSLQCMFCRTVCSSDLEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQNHHGGNERVTMGGAPGKETFEEHANTVTNNPISPMNSLYVNALLGKAAAPLMPLVPQNNNNSILDYNVAFAAHLNKGLFPASATSKFYSPLQVDTNAMKHPALMYGLSQRYFDTSRTLMDLYSNHHQQDKSAVNTAAAANYFISPKHPVTPHVHQESLNRNSNDGTSASNSTSIAGFSCDICERNDFRTEAEVNSHRKIVHNMKTGVSLRCAYCSGNFKSRSELEHHMKTCHNSTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCSHCSKPLNDVAAFKGHLTEHNNEGQMPVQCICCRQSLHSDFEIGLHAKFHTKSSNTPESVCALCLEPIPNATADAKVCEKCCRKHNLNNKYKNRESYERASELRHNYIENRCNLCKMILPHQHKLQEHLVEHTFAGCEDRGFICYICSAVFTAPSGLLNHMPEHGLNARPYDCNLCTEKYYFRAELDHHLLEHELRETQQEMREGIGGRLMAAKEEKPPPPPPQQLQPPTLQLVAHADQQKLSGIGTGNDLKMSEIKQEIFDADNKSNMGGDDDEYIEVENVHDINLNHQQQQQSGAHLEVEKQQESKATTTAIEEET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01133116;
90% Identity
-
80% Identity
-