Pscu009632.1
Basic Information
- Insect
- Palloptera scutellata
- Gene Symbol
- L
- Assembly
- GCA_958295655.1
- Location
- OY282451.1:1090051-1097299[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 7.6e-06 0.00038 20.7 1.7 1 23 191 213 191 213 0.98 2 19 0.63 32 5.2 5.8 1 23 219 241 219 241 0.98 3 19 3.3e-07 1.7e-05 25.0 3.1 1 23 247 269 247 269 0.99 4 19 1.5e-05 0.00076 19.8 0.3 1 23 275 297 275 297 0.98 5 19 2.3 1.1e+02 3.5 0.2 2 23 360 383 359 383 0.84 6 19 0.0015 0.077 13.4 0.5 3 23 417 438 415 438 0.96 7 19 0.058 2.9 8.5 0.7 1 23 534 556 534 556 0.97 8 19 0.0014 0.068 13.6 1.5 2 23 564 585 563 585 0.96 9 19 0.00042 0.021 15.2 0.2 1 23 593 617 593 617 0.94 10 19 1.1 56 4.4 0.1 1 19 622 640 622 642 0.93 11 19 0.97 49 4.6 0.3 2 23 653 675 652 675 0.95 12 19 0.0042 0.21 12.1 2.7 1 23 714 736 714 737 0.96 13 19 2.5 1.3e+02 3.3 1.1 1 23 911 935 911 935 0.90 14 19 0.007 0.35 11.4 4.7 2 23 944 966 943 966 0.96 15 19 0.17 8.4 7.0 0.1 1 23 972 994 972 994 0.92 16 19 0.52 26 5.5 0.4 2 23 1002 1023 1001 1023 0.94 17 19 0.77 39 4.9 2.3 2 23 1114 1135 1114 1135 0.94 18 19 0.0039 0.2 12.2 0.0 1 23 1145 1167 1145 1167 0.96 19 19 0.12 5.8 7.5 1.4 1 23 1174 1196 1174 1196 0.96
Sequence Information
- Coding Sequence
- ATGTATTCTACACATACATCCTCCAGCTATTCACCATCCATATCTGATGGCACGATTACACCAAATTCTTTGCATCATCACTTGCCAACGCATCATCAACATTTGCAGCACTTGCAGAATTTGCAACATCTTCACGAGTCTGCCGCTTCTATCAGCGGCGAAGACAATGGTGGGGTTCAGATGACGGCGCAGTGTCTACGTAGACAATCTgctgccagcaacaacaacaacaataacaacaaaagcacagCTAACGGTGGTGGTGATGTTATTGACGCCACTGCTGAGGATGAGCATGAAGTGAATGGCATCAATAAGAACTTAAATGAGGCAACAAGAAAAGCCAACAAAGGTGTTACTGATGGTAGTGGTGACGGTGTCGCAACCGATGTCAACGTTGAACAACTTAGACGACAACAGGGTCGCCTGCATCGTCATCACCATGCCGAGCATACTATGAAAATACCAACCAAATTACGTAAAACCGAGAGGGATGCAGCAGCCATAGCAAAGTTTGATAAGTTGACAGCAGACGGTATTaaaaacagtaacagcaacgCCGACGGATCCTATCAGTGTCAGTTTTGTGATAAATCATTTCCGCGACTTGGTTACTTAAAAAAGCACGAACAGAGCCATGCCGAGCATTTGCCGTTCAAGTGTGACTATTGTGCGCGTCTTTTCAAACATAAACGATCTAGAGATCGCCACACAAAGTTGCATACCGGCGATCGGCGTTATAGATGTCCCCATTGTGAAGCAGCATTCTCAAGAAGTGACCATTTGAAAATTCACATGAAAACGCACGACAATCAAAAACCTTTTCAGTGCACAATCTGCAATCGAGGCTATAACACTGCTGCCGCTCTAACCTCACATATGCAAAACCATAAGAAGCAAGCAGCCATATTGGCGGCTGGTGGCAATCCTCAAGCGCTGAATTACAGTCCTCGCTCCACGGGCTCAGCATCGAGTAATGGCAGCTTGCATAAACGTCGATATGCCATGGCCATTGCTGTTGCAGATAATAGTCCAGGTCGTTTAGAATATCCGAAGCGGCTGCGTGCTTCTCTTCTAAATTGTAGCTATTGCACTAAATCTGACTTCAACTCATTAGAGCAATTAAACGCACACGCCCAAGCAATGCACGAGAAAGAGCTGTTGCCACCAGCAACACCACAAACTCCAACTGCACCAAATATAAGCAGCGGTGGCAGTTCTAGCGAAATGAATGCCTTACAATTGGCCTGTGAATATTGCACAATGAAATTTCCAAATCTACCTACGATGTTTCAGCACATGCGCACCACACACATCGATCGCTTGACAAGCCCCAATTCATACTTTGAGCATTTCAATCGCTTGGCTGCATCGGGCACTTTCAGTCCACGGCTGATATCGTCCATGACTGCCCAACAGCAACGAAATGGCTCCGAAGAGAGACACATTAAAATAGAACAAGCTACTGCAAGCCCAAAGAGCCAACTGGACGTTAAGCAAGATGAGGAGCCCACAGATTTGAGTCAAAATAAACGTCGCTTCGAAACGCCGACAATAACGCCACAAAACTCTCCACACATTGCTGAGAAGCCGGGAGTTTTCTTTTGCAATCAGTGCAACGCTGGCCTGCCAGATTTCGATAGTTTTCGCAATCACCTCAAATCACATATCGCCCAGGGACTGCAGCTCGTCTGCCACCACTGCGGCTTAACGCTGCGCGAGCAATCCGAATATGAGCGCCATGTCATCTCACACTTTCTCATCGCCAACTCTGAGTACAAGTGCGCCGGCAACTGCAATAAGACCTATGCTAAACCCGAAGAATTGCAGAAACATTTGCTGGATCAACATGTTGTTCCAATGTACAAGTGTTCACTTTGCACTGAGTTGTTTGATTCAAAGGTGGCGATTCAAGTGCATTTTGCCTGCGCCCATTCTTCGGAGACTAAACTGCTGAGATGTTCTGCATGCATGGAAGTATTTCGTGCGGAGTCTGACTTTAACATGCACGTAAAAACACGTCATCAGGCTACAAATGGTACCGCAACAGCGGCAAATTCGCTGCAGTGTATGTTTTGCCGCACGATTTGTTCGTCCGATCTTGAGATGCATTTTCATCTGGCAGCACATGCACGTCAATTTCGTTGTCCATCATGTCCAGAGACATTCCATGTGGAGTTCCTGCTCGATCGTCACATGCAAAGTCATCACGGTGGCAATGAACGCGTACCAATGGGAGGATCGGCTGGCAAGGAGACATTCGAAGAACATCCAAATACGGTGACTAATAATCCAATCAATCCGATGAACTCACTTTATGTGAATGCATTGTTTGGTAAAGCGGCGGCCCCTCTAATGCCAGCGGCagcacaaaataataacaacagtaTTCTTGACTACAATGTTGCATTTGCGGCTCACATAAATAAAGGACTGTTTCCAGCCGCCGCAGCCAGCAAGTTTTATAGTCCATTGCAGGTTGATACCAATGCCATGAAGCATCCTGCTCTAATGTATGGCCTCAGTCAACGATACTTTGACACGAGTCGCACGCTCATGGATATGTATTCCCACCACCATCAACAGGATAAGTCAGCTGTTAATGCCGCCGCTGCTGCAAACTATTTCATAAGTCCCAAGCATCCAGCTACACCGCATTCACATCAGGAGTCGCAAAACCGAAATCCAAACGAAGCTACCAGTGCTACCAACTCTACTTCCATTTCTGGTTTCAGTTGTGACATATGTGAACGTAATGATTTTCGAACAGAATCCGAAGTTCACTCGCATCGTAAAATCGTTCACAACATGAAAACAGGGGTGAGTCTACGCTGCGCGTACTGTTCGGGCAATTTTAAATCACGTAACGAGTTGGAGCATCATATGAAAACATGTCACAACTCTACCGGTAAGCACAAATGCCTTATTTGTGATGAAATATTTCCATCTCCTGCAATACTTGCCGAGCATAAGTTACAACACTCGAAAGTGGGCCAGTCTGGAAAATGTTCGCATTGTTCCAAGCCTCTGAATGATGTGGCAGCATTCAAGGGTCATCTGACAGAGCACAATAATGAGGGCCAAATGCCGGTGCAGTGCATCTGCTGTCGTCAATCGTTGCACTCCGACTTCGAGGTTGGACTGCATGCGAAATTTCACACGAAGTCCTCAAATACACCAGAAAGCGTTTGCGCACTGTGTCTTGATCCAATACCCAATGCAAATCCCGACGCTAAAGTTTGTGAAAAATGTTGTCGCAAACACAACCTCAacgcaaaatacaaaaatcgtGAGAATTACGAACGCGCTTCAGAGTTGCGTCATAATTATATTGAGAATCGTTGTAATCTCTGCAAAATGATATTGCCACACCAGCACAAGTTGCAAGAGCATTTAGTCGAGCATACCTTTGCTGGGTGCGAGGATCGTGGCTTTATTTGTTACATCTGCTCCGCTGTATTTACAGCACCCAGTGGGCTGCTAAATCATATGGCTGAACATGGTTTAAATGCACGGCCGTATGATTGTAACCTGTGCACGGAAAAATACTATTTTCGTGCGGAATTAGATCATCATTTGTTGGAGCATGAATTGCGTGAGACACAGCAAGAGATGAGAGAAGGTATTCGTGGAATTTTAACGACAGCAAAAGATGaaaaaccaccaccaccaccaacacaaccgccacaacagccacaacagccACAACCGCCATCACtgcaaaaatttattggaattggAGAGGGAAATGACCTTTCAATGAACGAGATTAAGCAAGAAATATTTGATGCAGATAATAAATCGAATATGGTTGGCGAAGATGATGAATACATTGAAGTGGAAAAAGTACACGATACTAATCTCAGCCATCAGCGGCAGCAGCAGGCTGCCCATCTCGAAGAGGAGAAGCAACAGGAGTCTAAAACAACGACAGCGGCAATTGAAGAAGAAACttag
- Protein Sequence
- MYSTHTSSSYSPSISDGTITPNSLHHHLPTHHQHLQHLQNLQHLHESAASISGEDNGGVQMTAQCLRRQSAASNNNNNNNKSTANGGGDVIDATAEDEHEVNGINKNLNEATRKANKGVTDGSGDGVATDVNVEQLRRQQGRLHRHHHAEHTMKIPTKLRKTERDAAAIAKFDKLTADGIKNSNSNADGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCDYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAAILAAGGNPQALNYSPRSTGSASSNGSLHKRRYAMAIAVADNSPGRLEYPKRLRASLLNCSYCTKSDFNSLEQLNAHAQAMHEKELLPPATPQTPTAPNISSGGSSSEMNALQLACEYCTMKFPNLPTMFQHMRTTHIDRLTSPNSYFEHFNRLAASGTFSPRLISSMTAQQQRNGSEERHIKIEQATASPKSQLDVKQDEEPTDLSQNKRRFETPTITPQNSPHIAEKPGVFFCNQCNAGLPDFDSFRNHLKSHIAQGLQLVCHHCGLTLREQSEYERHVISHFLIANSEYKCAGNCNKTYAKPEELQKHLLDQHVVPMYKCSLCTELFDSKVAIQVHFACAHSSETKLLRCSACMEVFRAESDFNMHVKTRHQATNGTATAANSLQCMFCRTICSSDLEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSHHGGNERVPMGGSAGKETFEEHPNTVTNNPINPMNSLYVNALFGKAAAPLMPAAAQNNNNSILDYNVAFAAHINKGLFPAAAASKFYSPLQVDTNAMKHPALMYGLSQRYFDTSRTLMDMYSHHHQQDKSAVNAAAAANYFISPKHPATPHSHQESQNRNPNEATSATNSTSISGFSCDICERNDFRTESEVHSHRKIVHNMKTGVSLRCAYCSGNFKSRNELEHHMKTCHNSTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCSHCSKPLNDVAAFKGHLTEHNNEGQMPVQCICCRQSLHSDFEVGLHAKFHTKSSNTPESVCALCLDPIPNANPDAKVCEKCCRKHNLNAKYKNRENYERASELRHNYIENRCNLCKMILPHQHKLQEHLVEHTFAGCEDRGFICYICSAVFTAPSGLLNHMAEHGLNARPYDCNLCTEKYYFRAELDHHLLEHELRETQQEMREGIRGILTTAKDEKPPPPPTQPPQQPQQPQPPSLQKFIGIGEGNDLSMNEIKQEIFDADNKSNMVGEDDEYIEVEKVHDTNLSHQRQQQAAHLEEEKQQESKTTTAAIEEET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01470774;
- 90% Identity
- -
- 80% Identity
- -