Ttub041379.2
Basic Information
- Insect
- Torymus tubicola
- Gene Symbol
- ORF_1
- Assembly
- GCA_035583055.1
- Location
- JAWWEQ010047995.1:11325-14510[-]
Transcription Factor Domain
- TF Family
- HMGA
- Domain
- HMGA domain
- PFAM
- AnimalTFDB
- TF Group
- Unclassified Structure
- Description
- This entry represents the HMGA family, whose members contain DNA-binding domains, also known as AT hooks due to their ability to interact with the narrow minor groove of AT-rich DNA sequences. They play an important role in chromatin organisation [1]. The high mobility group (HMG) proteins are the most abundant and ubiquitous nonhistone chromosomal proteins. They bind to DNA and to nucleosomes and are involved in the regulation of DNA-dependent processes such as transcription, replication, recombination, and DNA repair. They can be grouped into three families: HMGB (HMG 1/2), HMGN (HMG 14/17) and HMGA (HMG I/Y). The characteristic domains are: AT-hook for the HMGA family, the HMG Box for the HMGB family, and the nucleosome-binding domain (NBD) for the members of the HMGN family [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8 5.3e+04 -6.8 6.9 10 15 675 680 675 681 0.81 2 2 7.7e-09 5.1e-05 24.3 10.1 8 21 708 721 705 722 0.93
Sequence Information
- Coding Sequence
- ATGGAAGAAGATCGACTTCGGCCAAGAAATGAGAACGTACATTTGCAGGATACGTACACTTGGATAGTGAGGAAATGGAATGTATCCTTCTCTGTCGAAAGGGGCCAGAGCATCGAAGCCTTCCTAGAAAGAGTTGAAGCGTGCAGAGGCTCGACAAGCTTAACGGAAGCAGCTCCAAGCTATTCCAAGCTCTGCCAGACTCCTGAAAGGCGTTGCAGCCATGTGGTTTCAAGTGGAGAAGAATCGCTGGAACACATGGATAGGTTATCGGCGATCGTTCTGACCAATTTGCTCGGGAAACGAGAGTTAGCGCGATTAGAAGGGCCTAAATCCGCCGAGACCACGCTAGAGGCCCCGATATTGTCTAAAAAGGAAGGAAGACGACCAATTGACTTGGCCGTCACCGTTAGCCAAGTCAAAGTTGAGCAAGGAAACACTTCCAAGGAGCTCGAACGCAACTCGAATCAGATCCTATTGGGCGGGGTCAAACGAGATGTGCTGGTATCGATTATACCAGACTTGGAAGTTGACTGTTACGTCGGTTCCAATTTCGTTCGAGCATTCGAGATAATGCACGACCCCGCAGAGAACAGGTTGATAGTGGAAAAATGCGGTAAAAGTATTGGACTAGAACTAGCCTGTGTCTCTTCGTCAAATCCTGATGATCCGAGTCAGATCGGGATAGCTTCCTTAAACATGATGAAAGCTTCTTCAGCAGGTCTAGCTGATATAACGCTGGAAGAACACCAGCGTTTACAAGATCTTTTGAAGAGAGTATTACCGCCGGATGATGCCCCGCTCGGTTGCACGAGCTGTGCCGAACACGAGATAAATGTTGGCACTACTCGGCCGATCCGGCAAAAACAATACCCCATCTCGAGGAAATTAGAAGACGAAATGCACCGACAAGTGCGAGAGATGTTAAAAGCCGGGTTGCTCGAACCATCATCAAGTCCCTGGTCTAATCCTGCATTCATGGTGCCGAAAGCTGGCAATAAACATAGCATGGTGATAGACATGCGCAAAGTGAACGCGGCCGCAAAGGGAGATGCATATCCCCTGCCAAATATGGAGCAGATCTTACTGTTATATGACATCATCATCGCCACGGAGACATTTGAAGATCTGGTGATGTTAGAACGCGTATTGGCCAGAATCAATGAAGCAGGCCTCACGATCAACCGAGAGAAGAGCGTATTCGGTAGAAATGAGGTGAAATATCTCGGCGTTCTCGTCAACCGAAATGGATTTAGACCAGATCCGGATAAGATAGCTCCGGTTATGCAGTATCCCGAGCCTAAGAACCTTAAGCAACTAAGGCGATTCCTTGGTACATGTGGGAAGAGGAACAACAGCGAGCCTTTGACCACATCAAGGCACTTATCGCGACAGGTGCTACACCAGCCAGACTTTAACTCGCGTTTTGTAATACAAACGGACACTAATGATACTGGCCTGGGAGCGGTATTATACCAGGTGATAGATGGCCAGGAGCGTGTCTTGGAGTTCGCGAGTCGTTCGCCGTCAAAAGCGGAGAGGAATTACTCGGCAACCGAAGGAGAATGCCTTGCTGTGTTGTGGCCCATCGAAAAGTTTCGGGTTTACGTAGAGGGATATCATTTCCTCGTAGTGACCGACCATAGTAGTTTACGTTGGATTCGGACACTGCGTAGTCCGACAGGTAGGCGCGCACAAGGAGTGATGGCGAAATTGGCACCAAAATACGTTAACCCTTATGAAATTTTAGAGAAGAGAGGGCCAAACACGTATAAATTAGTGGACCAAGAAGGAGATATAGAAGATCTGGTCCACGCAGAACACCTGAAGCCATTTTACGCCGAAAGGGTGTCCGAGGATAACGAAGACGAAACACAGTTATGTTAcggcgaagaagaagatgacATCGCCCGACCACCGAGGGATTCTATCGAAACGGCAAAGAGCGACCCGCCGCAAGCGAGAACTCAGTCGCCATCGGGCACTGAGCAAGATCAGGACGAGGTTGGTATAACTATTCAAGCTCGCGGGAGGGGTAGGCCAAGGAAGACTACTTTAGTTATACAGAAGCAGGTCGATCCTACTCCCGTATCAGCCAACCCCGTGCCTATTGCGAGCGAACCCCCTAAGAGACCGCGCGGTCGGCCAAAAGGGTCGAAAAATCGCGTGTTAAACAGCGACCCCGTTCCCGTTAGCTCCCGGAGAACACGCGCAAATCCGAACCAAGGTTTACGAGGATAA
- Protein Sequence
- MEEDRLRPRNENVHLQDTYTWIVRKWNVSFSVERGQSIEAFLERVEACRGSTSLTEAAPSYSKLCQTPERRCSHVVSSGEESLEHMDRLSAIVLTNLLGKRELARLEGPKSAETTLEAPILSKKEGRRPIDLAVTVSQVKVEQGNTSKELERNSNQILLGGVKRDVLVSIIPDLEVDCYVGSNFVRAFEIMHDPAENRLIVEKCGKSIGLELACVSSSNPDDPSQIGIASLNMMKASSAGLADITLEEHQRLQDLLKRVLPPDDAPLGCTSCAEHEINVGTTRPIRQKQYPISRKLEDEMHRQVREMLKAGLLEPSSSPWSNPAFMVPKAGNKHSMVIDMRKVNAAAKGDAYPLPNMEQILLLYDIIIATETFEDLVMLERVLARINEAGLTINREKSVFGRNEVKYLGVLVNRNGFRPDPDKIAPVMQYPEPKNLKQLRRFLGTCGKRNNSEPLTTSRHLSRQVLHQPDFNSRFVIQTDTNDTGLGAVLYQVIDGQERVLEFASRSPSKAERNYSATEGECLAVLWPIEKFRVYVEGYHFLVVTDHSSLRWIRTLRSPTGRRAQGVMAKLAPKYVNPYEILEKRGPNTYKLVDQEGDIEDLVHAEHLKPFYAERVSEDNEDETQLCYGEEEDDIARPPRDSIETAKSDPPQARTQSPSGTEQDQDEVGITIQARGRGRPRKTTLVIQKQVDPTPVSANPVPIASEPPKRPRGRPKGSKNRVLNSDPVPVSSRRTRANPNQGLRG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -