Ttub000916.1
Basic Information
- Insect
- Torymus tubicola
- Gene Symbol
- lov
- Assembly
- GCA_035583055.1
- Location
- JAWWEQ010000001.1:14246149-14248624[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 1.8e-05 0.03 15.5 0.0 1 37 209 245 209 252 0.85 2 6 2.2e-13 3.7e-10 40.8 0.0 3 39 261 296 259 303 0.88 3 6 0.0018 3.1 9.1 0.0 6 34 316 343 312 349 0.83 4 6 3.5 5.9e+03 -1.4 0.0 31 44 357 371 357 372 0.85 5 6 9.3e-13 1.6e-09 38.8 0.0 3 40 373 410 371 414 0.92 6 6 2.4 4e+03 -0.9 0.0 2 19 440 460 439 461 0.74
Sequence Information
- Coding Sequence
- ATGGCCGAGAGGTCTAGTATTACCGACAATACGGACCCTCAATCATCCGGTATTCAATCCGGTACTCAATACTGCTTCAAATGGAGCAATTATCAAAGTCACTTGGCAGAGGTGATGCGGGAACTCCTCGACGAGGAGTCGATGGTCGATGTTACGATCTCAGCTGGTGGTGAGCGCATACAGGCACATCGGCTAGTACTTTGCGCTTGTAGCAGTTTATTCGCGgAACTGTTATGCCATGTGAGCGAGGAACATTCTACCATAATCATTCCTGATATAGCTCCACAGgatataaaatcaattgtaGAATTCAGCTACAATGGAGAAGTCAGAATACCCGTGGAAAACATAAACAATCTGCTACAAGCAGCtcactttctaaaaatatatggttTGATGGAAattgaagGCCTTGATGAGACTGAAACTTCTAATGAAAAAGATGTCTCTGGCGAAGAATGTTATGCTCTTGATGAAAATGTAGAGTCTGAAGataataaacacatatataaaaaaggaaataataagaccaatgaagaaaagaaaaggaaatattCAGATTCTGATTCAAACCCAAGATATACAACCATAAAACGAAGAAAGAGTGTATGTAAGAGAGATTATACTGATGAAATGTTAAAATCTGCTCTTGATGAAATTCGTGATGGAGGTACATTACTTGAAGCAGCTGCCAAACATTGTATACCTAGGTCTACTCTGTACATGCGAGCAAAAGCTCTTGGTATAGCATTGAATCCATGTAGAAATGAATATACACTTGATGATATGAAGCAAGCTATAGAAGCTGTCATAACTGGATCAAGTTTACAACAAGCTGCAGATATGTTTGGTATACCAAAAACAGTTTTATGGAGGCGAATTCAGAAAGAAGGGTACAGGTCTAATAGGCATGacacaagaaaaaattatgctCCTGACAAAAGAGAAGCTGCTGTAAAAGCTTTAGAAAGAGGAGAAGGTCTTACTAAAGTTGCAAAtgaatataaaattCCAAAAACAACGCTATTTAGGGATAAAGCACGTCTTGTTGACGAGGGAAAACTACCTTCAACATTTTGGAAAAAACGTAAAGCCGATGGAGAGGACCATAAACAAACACGTTTAGAAGAAGCTGTAGCTGCCTGCAAAAATGGTAAAATGTCTCAAGGTACAGCTGCGGCTACTTATCACATACCTAAAACTACTATTTGGAGACGGCttcaaaaagataataaaaaatctgattCAGATTCTCCAcctaaaaaatcatcaaaaaagagGGATTCAAATGGTAATAAATCTATAGAATCAATAAAACCAGAAGAATTTAATGAAGCTGATTTCGAGGCATATTGTCCgGAGGAAGGAGAAATGAGTATAacatatattgatgaaaataatatgtCAGAAGATCCAGTAATTATTCTTGCAAGTGGAGATGTAGACCAATTAAACTTACCAAACAGTAGGTCTTTGGTAGTTGTTCAGCAAGATggcaatgaagataattttatatcatgTGGATTGGAATTAGATGATGCtacttttgtagaaaaaagCTAG
- Protein Sequence
- MAERSSITDNTDPQSSGIQSGTQYCFKWSNYQSHLAEVMRELLDEESMVDVTISAGGERIQAHRLVLCACSSLFAELLCHVSEEHSTIIIPDIAPQDIKSIVEFSYNGEVRIPVENINNLLQAAHFLKIYGLMEIEGLDETETSNEKDVSGEECYALDENVESEDNKHIYKKGNNKTNEEKKRKYSDSDSNPRYTTIKRRKSVCKRDYTDEMLKSALDEIRDGGTLLEAAAKHCIPRSTLYMRAKALGIALNPCRNEYTLDDMKQAIEAVITGSSLQQAADMFGIPKTVLWRRIQKEGYRSNRHDTRKNYAPDKREAAVKALERGEGLTKVANEYKIPKTTLFRDKARLVDEGKLPSTFWKKRKADGEDHKQTRLEEAVAACKNGKMSQGTAAATYHIPKTTIWRRLQKDNKKSDSDSPPKKSSKKRDSNGNKSIESIKPEEFNEADFEAYCPEEGEMSITYIDENNMSEDPVIILASGDVDQLNLPNSRSLVVVQQDGNEDNFISCGLELDDATFVEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01466091;
- 90% Identity
- iTF_01469817;
- 80% Identity
- iTF_01469817;