Basic Information

Gene Symbol
stc
Assembly
GCA_036873485.1
Location
JAYJLV010000001.1:13769471-13775075[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2 7.3e+04 -4.3 1.6 15 19 504 508 503 508 0.81
2 14 0.33 1.2e+04 -1.6 0.2 4 10 537 543 536 547 0.92
3 14 9.9e-07 0.036 16.0 10.2 4 18 554 568 551 569 0.93
4 14 1.5 5.4e+04 -3.7 1.1 6 10 595 599 594 599 0.89
5 14 2.7e-06 0.098 14.6 16.4 1 18 605 622 605 623 0.98
6 14 0.83 3e+04 -2.9 0.8 6 10 651 655 650 655 0.89
7 14 6e-10 2.2e-05 26.3 15.2 1 18 661 678 661 679 0.99
8 14 9.8e-05 3.5 9.7 12.5 4 18 726 740 719 741 0.86
9 14 1.5 5.6e+04 -3.7 2.0 5 10 770 775 770 775 0.93
10 14 0.014 5.2e+02 2.7 11.4 1 11 781 791 781 803 0.88
11 14 8.4e-10 3.1e-05 25.8 13.1 1 19 808 826 808 826 0.98
12 14 0.13 4.6e+03 -0.3 4.4 10 19 873 883 870 883 0.85
13 14 5.6e-07 0.02 16.8 15.5 1 16 919 934 919 945 0.85
14 14 0.0017 62 5.7 15.3 1 19 951 970 951 970 0.97

Sequence Information

Coding Sequence
ATGGCCACCTGGGATGGTTCCTATCCTGAACCAGATGGGTCAAGTTATTATGTCAACTCCAATCAAAACCATGCTCCTGCTAATGTACCAACCTGGGACTATTACCTCCCTAACTCAAGCAATGGATATGCTCAAAATGCAGCTACGCCATACAACTTGGAAACGTCCATGGTTTTTGAGCAGAGCACGCCCAACTACTACAATCATATTGACAGAAATACCATTCCTCCGTTAATGTCAAATATTGCACAAACTGTCAATGGGTATTCAAACAATGGAACGCAATCTACTGTTAATAAGATCCAAATGGGACCTTCAGAAACACATCTTAATTCTAGCACCAATCAATTGCCATGCTTCTATGAAGATAATAAAACAATGCAACAACAAATGCcaacatattattataacagaAGCAACAACTATCAAAATGGTGATAAACGTAAAGATACTAATAAACCTTATGAAGTATCTAATATAGTTGAAAACTCGAATTTACATGCCACAGCTACTGAATTTGTACCAAATCAAACTAAATTTGATCGAAGTACTGTaaattctaataaaactaataaaagtcGAGCAAATAATGATCATCAAAATCAGAGCCAAGAAGTAGATCAGAcagctaataaaattttttttgaagataataggacaaaatataatgataaaaggTGGAGAGAAACACAAAATACTCAGcaatataaagaagaaagaaaggacAATGGAAGGAATCAAAATAATAGAAGATATCAGAATGATAGATATAATCGCAATAGAAACTATTCTGAAAAACAGCAAAGCAATAGTACTGCAAAAGAGAATGTAGAAAATTCTGTTCCTGAACCATCTGAAACAGAATCTagttcaaataatattcaagaaagaacatttaatgaaaatcagGATAAAATCAGTAATACAGTAACTTCAAATCATGAAATCAGTAACTTACAATCAACAAATCAGCAATCTACAAGAAATTCAAAAGGATTTTCTAATAATGGTCGAGGAGACCGATATTATGATAGAAAAGAACGATATAATCCTAAAGATCCTAGTGATAGAAGAAGTAACTATTCAGATAATAGCCCATATAATCCTAAAGATCCTAGAGATAGAAGAACTAATTATCCAGAGAATAACggatataatagaaataattataatagggaaaataaatatgaaagaagAGATAATAGAAACTCATTTGCAGAAAGTCGGGATGATAAAACAGACTGGAGAAAAAGAACACCAGATacaggaaataaaaatacaacagcAAAACGTCCTcagagtaaaaaatatgaacCGGATGACGATGCCAGTCAACGAGAAAGACTGACAGAACAATTAAATCGTGGACAATTAGAATGTTTAGTCTGTTGTGAATTTATACGCCAAGCTGATTATATATGGTcatgtaaaaattgttatcatgTTATACACTTAAAGTGTGTACAAAAATGGGCTTTGTCATCACAGGATGATAGCGGCGGCTGGCGTTGTCCTGCATGTCAAAACGTCTCATCACAAGTACCTACGGATAATGTATGCTTTTGTGGAAAATCGAAAATGCAGGAATGGAATCGACGGGATATCGCGCATTCATGTGGCGAAATGTGTGGCCGCACTCGTCCCGACATCAATTGTGTGCATAAATGCACTCTTCTCTGTCACCCTGGTTCATGTCCAGCTTGCTTGGCTATGGTTACTAAGACTTGTGGTTGTGGACGTACATCCCAAATGCAGAAATGTAGCTCGGGTCCACTGTTACAATGCGATGAAGTTTGTGACCGACTACTCAATTGTGGGGTGCACAATTGCAAGACCAAGTGTCATCATGGTAGTTGTGAACCATGCGATAAAATTATCAAGCAAgaatgcTTTTGTAAAAAACATAGTCGAGAAAAAACTTGTGATTTAAACTTACCAACTACATACTCTTGTGAAAATGTTTGTGAAAAAGTGTTAGATTGTGGTAATCATAAGTGTAAAGAAATTTGCCATCCAGGAGAGTGTGGACCTTGCATTTTAAAACCTGAAACTGTCACACATTGTTGCTGTGGTCAAACTCCTTTGACTTTAAAAAGAGAAAGTTGCTTAGATCCCATTCCAACATGTGATAAAATGTGTGAAAAGCGGTTGAAATGTGGTCAACctaGCCAACCTCATATCTGCCAAGCAAACTGCCATGAAGGCGATTGTCCTGATTGTGAATcagttactaaagttaaatGTCGCTGTGGTCACATGGATAAGGAAATCCCTTGCATAGAACTGACGACTAAGGCTGATGACGCTCGTTGCGAGAAAAAGTGTACGAAAAAACGTTCATGTGGCAAGCATAAATGTAATCAAATGTGTTGCATTGACATCGAACACATATGTCCACTTCCATGCTCAAAGACTTTGAGTTGTGGTAGGCACAAATGTGAACAAACTTGTCACAGAGGTAGGTGCCAGCAATGCTGGCGCAGCAGCTTCGAAGAGCTGTACTGCGAGTGCGGCGCCGCGGTGATCTACCCACCGGTACCGTGTGGCACTCGCCGTCCCGCCTGTGACAAACCCTGTACGCGCGAGCACGCCTGCGACCACGAGGTCCTACACAACTGCCACAGCGACGCCAATTGTCCGCCCTGTACTGTTCTCACTCAGAAGTGGTGCTACGGCGAGCATGAGCTGCGCAAAGCCGTGCCCTGCTACGTCAATGAAGTGTCCTGCGGTCTGCGTTGTGGTAAACCTATCTCCTGTGGCCGGCACAAATGCATCCAGATGTGTCATCCTGGTCCCTGCGAGAAACCTGGGCAAGTCTGCACGCAGCCTTGCACCGTTCCGCGAGAGCTGTGCGGACACATTTGCGGTGCGTCGTGCCACGGAGGCAAGTGCCCCGACACACCCTGCAAGGAGATGGTCAAGGTGACGTGTCAATGTGGTAATCGAATGCAATCTCGTGTATGCGCGGAAAACGCCCGAGATTATCAAAGAATAGCTAGTGGAATTTTAGCCAGTAAAATGGCAGATATGCAACTTGGACATTCGGTCGATCTAGAAGAGGTCTTCGGCCAAGGTGCTAAGAAACAGAATCAGCTGAAAACTCTAGAGTGCAATGAAGATTGTAAAATGATTGACAGAAACCGTCGACTAACACTTGGTCTACAGATAGCCAATCCAGACTTGAGTGGTAAGCTCCTGCCGAAGTACAGCGAGCACATGAAGATGTGGGGCAAAAAGGATCCTGCCTTTTGTCAAATGGTGCATGATAAGCTTACTGAACTTGTGCAGCTAGCTAAGATTTCAAAGCAAAAATCACGAAGTTACTCATTTGAAAGTATGAATCGAGATAAGAGGCAGTTTCTACATGAATCGTGCGAGCATTTCGGCTGCGAGAGTCAGGCTTATGATCAAGAACCAAAACGTAACGTTGTTGCGACAGCCGTAAAAGATAAGtgTTGGTTACCAAGTTACAGTTTGTTAGAATTATTGCAAAGAGAAAACGGTCAACGAAAAGTACCAAGACCAATGTTAAATAAGTCAAAAGTAGCAACGGAAAgGAGTATGGATAGTCTACAATTAAATACGAAGAAGAGTCTGAAACCTCTGCCTACGACCTCGGCTTCGCCATCAAGGTCACCAGAACCTGAAATAGACTACTTCAATTACAAGGGTTGA
Protein Sequence
MATWDGSYPEPDGSSYYVNSNQNHAPANVPTWDYYLPNSSNGYAQNAATPYNLETSMVFEQSTPNYYNHIDRNTIPPLMSNIAQTVNGYSNNGTQSTVNKIQMGPSETHLNSSTNQLPCFYEDNKTMQQQMPTYYYNRSNNYQNGDKRKDTNKPYEVSNIVENSNLHATATEFVPNQTKFDRSTVNSNKTNKSRANNDHQNQSQEVDQTANKIFFEDNRTKYNDKRWRETQNTQQYKEERKDNGRNQNNRRYQNDRYNRNRNYSEKQQSNSTAKENVENSVPEPSETESSSNNIQERTFNENQDKISNTVTSNHEISNLQSTNQQSTRNSKGFSNNGRGDRYYDRKERYNPKDPSDRRSNYSDNSPYNPKDPRDRRTNYPENNGYNRNNYNRENKYERRDNRNSFAESRDDKTDWRKRTPDTGNKNTTAKRPQSKKYEPDDDASQRERLTEQLNRGQLECLVCCEFIRQADYIWSCKNCYHVIHLKCVQKWALSSQDDSGGWRCPACQNVSSQVPTDNVCFCGKSKMQEWNRRDIAHSCGEMCGRTRPDINCVHKCTLLCHPGSCPACLAMVTKTCGCGRTSQMQKCSSGPLLQCDEVCDRLLNCGVHNCKTKCHHGSCEPCDKIIKQECFCKKHSREKTCDLNLPTTYSCENVCEKVLDCGNHKCKEICHPGECGPCILKPETVTHCCCGQTPLTLKRESCLDPIPTCDKMCEKRLKCGQPSQPHICQANCHEGDCPDCESVTKVKCRCGHMDKEIPCIELTTKADDARCEKKCTKKRSCGKHKCNQMCCIDIEHICPLPCSKTLSCGRHKCEQTCHRGRCQQCWRSSFEELYCECGAAVIYPPVPCGTRRPACDKPCTREHACDHEVLHNCHSDANCPPCTVLTQKWCYGEHELRKAVPCYVNEVSCGLRCGKPISCGRHKCIQMCHPGPCEKPGQVCTQPCTVPRELCGHICGASCHGGKCPDTPCKEMVKVTCQCGNRMQSRVCAENARDYQRIASGILASKMADMQLGHSVDLEEVFGQGAKKQNQLKTLECNEDCKMIDRNRRLTLGLQIANPDLSGKLLPKYSEHMKMWGKKDPAFCQMVHDKLTELVQLAKISKQKSRSYSFESMNRDKRQFLHESCEHFGCESQAYDQEPKRNVVATAVKDKCWLPSYSLLELLQRENGQRKVPRPMLNKSKVATERSMDSLQLNTKKSLKPLPTTSASPSRSPEPEIDYFNYKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01468519;
90% Identity
iTF_01465876;
80% Identity
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