Basic Information

Gene Symbol
stc
Assembly
GCA_036365515.1
Location
CM070874.1:98882678-98888223[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 2 1.3e+05 -4.3 1.6 15 19 518 522 517 522 0.81
2 17 0.13 8.5e+03 -0.3 0.3 4 10 551 557 550 558 0.94
3 17 1.5e-06 0.096 15.5 10.7 4 18 568 582 566 583 0.93
4 17 1.5 9.9e+04 -3.7 1.1 6 10 609 613 608 613 0.89
5 17 1.2e-06 0.078 15.8 16.3 1 18 619 636 619 637 0.98
6 17 0.33 2.1e+04 -1.6 1.8 1 10 646 655 646 655 0.88
7 17 0.84 5.5e+04 -2.9 0.8 6 10 665 669 664 669 0.89
8 17 1.4e-08 0.00093 21.9 13.6 1 18 675 692 675 693 0.98
9 17 1.5 9.6e+04 -3.7 1.4 5 10 722 727 722 727 0.93
10 17 9.9e-05 6.4 9.6 12.5 4 18 740 754 733 755 0.86
11 17 1.6 1e+05 -3.8 2.0 5 10 784 789 784 789 0.93
12 17 0.014 9.3e+02 2.7 11.3 1 11 795 805 795 817 0.88
13 17 8.5e-10 5.6e-05 25.8 13.1 1 19 822 840 822 840 0.98
14 17 0.91 5.9e+04 -3.0 1.1 6 10 869 873 868 873 0.89
15 17 0.3 2e+04 -1.5 5.5 10 19 887 897 885 897 0.84
16 17 2.9e-06 0.19 14.5 15.4 1 16 933 948 933 959 0.85
17 17 9.7e-05 6.3 9.7 15.2 1 19 965 984 965 984 0.97

Sequence Information

Coding Sequence
ATGGCCACCTGGGATGGTTCCTATCCAGAACCAGATGGGTCAAGTTATTATGTCAACTCCAATCGAAACCATGCTCCTGCCAATGTACCAACCTGGGACTATTACCTTCCAAACTCAAGCAATGGATACGCTCAAAATCCAGCTACCCCGTACAACTTAGAAACATCCATGGTTTTTGAACAGAGCACGCCCAACTACTACAATCACACTGACAGAAATACCATTCCTCCGTTAATGTCAAATATTGCACAAAGTGTCAATGGGTATTCAACCAATGGAATGCAATCTACTGTCAATAAGATCCAAATGGGACCTTCCGAAACACATCTTAATTCTAGTACCAATCAATTGACATGCTTCTATGAAGATAATAAAGCAATTCAACAACAAATGCCAGCATACTATTATAACAGAAACAACAGCTATCAAAATGGTGACAAACGTAAAGATACTAAGAAACTTTATGAAGTATCTAATATACTTGAGAACTCCAATTTACATGCTACAGCTATTGAATTTGTACCAAATCAAACTAAAGTAGATCGAGGTACTTCTTtaaatgcaaataaaaataGTAGAAGTCGAGCAAATAATGATCATCAAAATCAAAGCCAAGAAGTAGATCGTACAgctagtaaaattttttttgaagatAATAGGACAAAatacaatgataaaaaatttgaaaataaaagagatgcTGGCAAAAGGTGGAGAGAAACACAGAATAATCAGCAATataaagaagaaagaaaagacAATGgaagaaatcaaaataatagAAGATATCAGAATGACAGGTATAATCGCAATAGAAACTATTCTGAAAAACAACAAAGCAATCATACTCCAAAAGAGAATGCAGAAAATGCTGTTCCTGAATCATCTGAAACAGAATGTAGTTCAAATAATACTCAAGGAAGAATGTTTAATGAAAGTCAGGATAAGATCAGTAATACAGTAAATTCAAATCATGAAATAGATAACTTGCAATCAACGAATCAACAATCTGCAAGAAATTCAAAAGGATTTTCTAATAATGGCCGAGGAGATAGGTATTATGATAGAAAAGAACGATATAATCCTAAAGATCCTAGAGACAGAAGAACTAACTATCCAGAAAATAGTGCACCAATATATAATCCTAAGGATCCTAGAGATAGAAGAAGTAATTATCCAGAGAATAATGGATATAATAGGAATAATTATAATAGGGATAATAAATACGAAAGAAGAGATAATAGAAGCTCCTTTGCAGAAAATCGGGACGATAAAACAGACTGGAGAAAGAGAACGCCAGATACAGGAAATAAAAATACAACATCGAAACGTCCTTCTCAGAGTAAAAACTATGAACCAGATGATGATGCCAGTCAAAGAGAAAGACTGACAGAACAATTAAATCGCGGGCAATTGGAATGTTTAGTCTGTTGTGAATTTATGCGGCAGGCTGATTATATATGGTCATGCAAAAATTGTTATCATGTTATTCACTTGAAGTGTGTACAAAAATGGGCTTTGTCATCACAAGATGATAGTGGTGGCTGGCGTTGTCCGGCATGTCAGAACGTCACACCAGAAGTACCCACGGATTACGTATGCTTCTGTGGCAAATTGAGGATGCCAGAATGGAATCGACGCGACATCGCGCATTCATGCGGTGAAACGTGCGGCCGTACTCGTCTTGACACGAATTGCGTGCACAAATGCACCCTTCTCTGTCACCCAGGTTCGTGTCCAGCTTGCTTGGCTATGGTTACCAAGACTTGTGGTTGTGGACGCACATCCCAAACGCAGAAATGCAGCTCGGGTCCACTGTTACAGTGCGACGAAGTTTGTGACCGATTGCTCAATTGCGGCGTGCACAACTGCGAGACCAAGTGCCACCATGGTAGTTGCGAACCATGCGATAAAATTATCAAGCAAGAATGTTATTGTGGAAAACATAGTCGAGAAAAAACTTGTGATTTAAACTTACCACCTACATATTCTTGTGAAAATGTTTGTGACAAAGTGTTAGATTGTGCTAATCATAAGTGTAAAGAAATTTGCCATCCAGGACAGTGTGGACCTTGCATTTTAAAACCTGAAACTGTTACACATTGTTGTTGTGGACAAACTCCTTTGACTGTAAAAAGAGAAAGCTGCTTAGATCCCATTCCAACATGCGATAAAACATGTGAAAAGCGGTTGAAATGTGGTCAACCAAGCCAACCTCATATCTGCCAAGCAAATTGCCACGAAGGTGATTGCCCTGATTGTGAATCGGTTACTAAAGTTAAATGTCGCTGTGGTCATATGGACAAGGAAATCCCTTGCATAGAACTGACAACTAAGGCTGATGACGCTCGCTGCGAGAAAAAGTGTACGAAGAAACGTTCCTGTGGGAAGCATAAATGTAATCAAATGTGTTGCATTGACATCGAACACATATGTCCACTTCCGTGCTCAAAGACTTTGAGTTGTGGTCGGCACAAATGTGAGCAAACTTGTCACAGAGGTAGGTGTCAACAGTGCTGGCGTAGCAGCTTCGACGAGCTCTACTGCGAGTGCGGCGCCGCGGTGATCTACCCGCCGGTGTCGTGCGGCACACGCCGTCCTGCCTGTGAGAAGCCCTGCACGCGCGAGCACCTCTGCGACCATGAGGTCCTGCACAACTGCCACAGCGACGCCAATTGTCCGCCCTGCACCGTCCTCACTCAGAAGTGGTGTTATGGCGAGCATGAGCTGCGCAAAGCCGTGCCCTGCTACGTCAATGAAGTGTCCTGCGGTCTGCGTTGCGGCAAACCCATCTCCTGTGGCCGGCACAAATGCATCCAGTCGTGCCACCCGGGTTCCTGCGAGAAGCCTGGCCAAGTCTGCACACAGCCGTGCACCGTGTCGCGAGACTTGTGCGGACACATTTGCAGTGCGCCCTGCCATGGGGGCAAGTGCCCCGACACACCCTGCAAGGAGATGGTCAAGGTGACATGTCAATGTGGAAATCGAACGCAGTCTCGTGTATGCGCGGATAACGCCCGAGATTATCAACGAATAGCTAGCGGAATTTTAGCCAGTAAAATGGCAGACATGCAACTTGGACATTCGGTCGATCTAGAAGAGGTTTTTGGTCAAGGCGCTAAGAaacaaaatcagctgaaaactCTCGAGTGCAACGAAGATTGTAGGATAATTGAGAGAAATCGCCGACTAACACTTGGTCTACAGATAGCTAATCCAGACTTGAGTGGTAAGCTCCTGCCGAAGTACAGCGAGCACATGAAGATGTGGGGCAAAAAGGATTCTGCCTTTTGCCAAATGGTGCACGACAAGCTCACAGAACTCGTGCAGCTGGCTAAAACATCGAAACAAAAGTCACGAAGTTATTCATTTGAAAGTATGAATCGAGATAAAAGGCAGTTTCTACACGAATCGTGCGAGCATTTCGGCTGCGAGAGTCAGGCGTATGATCAAGAACCCAAACGCAACGTTGTTGCGACAGCCGTAAAAGATAAATGTTGGTTACCAAGTTACAGTTTGTTAGAATTATTGCAAAGAGAAAATGGTCAACGAAAAGTACCAGGACCAATGTTAAATAAGTCGAAAGTAGCAACAGAAAGGAGTATGGACAGTCTACAATTAAATACAAAGAAGAGTCTGAAACCTCTGCCtacaacctcggcttcgccatCGAGGTCACCAGAACCTGAAATAGACTACTTCAATTACAAGGGCTGA
Protein Sequence
MATWDGSYPEPDGSSYYVNSNRNHAPANVPTWDYYLPNSSNGYAQNPATPYNLETSMVFEQSTPNYYNHTDRNTIPPLMSNIAQSVNGYSTNGMQSTVNKIQMGPSETHLNSSTNQLTCFYEDNKAIQQQMPAYYYNRNNSYQNGDKRKDTKKLYEVSNILENSNLHATAIEFVPNQTKVDRGTSLNANKNSRSRANNDHQNQSQEVDRTASKIFFEDNRTKYNDKKFENKRDAGKRWRETQNNQQYKEERKDNGRNQNNRRYQNDRYNRNRNYSEKQQSNHTPKENAENAVPESSETECSSNNTQGRMFNESQDKISNTVNSNHEIDNLQSTNQQSARNSKGFSNNGRGDRYYDRKERYNPKDPRDRRTNYPENSAPIYNPKDPRDRRSNYPENNGYNRNNYNRDNKYERRDNRSSFAENRDDKTDWRKRTPDTGNKNTTSKRPSQSKNYEPDDDASQRERLTEQLNRGQLECLVCCEFMRQADYIWSCKNCYHVIHLKCVQKWALSSQDDSGGWRCPACQNVTPEVPTDYVCFCGKLRMPEWNRRDIAHSCGETCGRTRLDTNCVHKCTLLCHPGSCPACLAMVTKTCGCGRTSQTQKCSSGPLLQCDEVCDRLLNCGVHNCETKCHHGSCEPCDKIIKQECYCGKHSREKTCDLNLPPTYSCENVCDKVLDCANHKCKEICHPGQCGPCILKPETVTHCCCGQTPLTVKRESCLDPIPTCDKTCEKRLKCGQPSQPHICQANCHEGDCPDCESVTKVKCRCGHMDKEIPCIELTTKADDARCEKKCTKKRSCGKHKCNQMCCIDIEHICPLPCSKTLSCGRHKCEQTCHRGRCQQCWRSSFDELYCECGAAVIYPPVSCGTRRPACEKPCTREHLCDHEVLHNCHSDANCPPCTVLTQKWCYGEHELRKAVPCYVNEVSCGLRCGKPISCGRHKCIQSCHPGSCEKPGQVCTQPCTVSRDLCGHICSAPCHGGKCPDTPCKEMVKVTCQCGNRTQSRVCADNARDYQRIASGILASKMADMQLGHSVDLEEVFGQGAKKQNQLKTLECNEDCRIIERNRRLTLGLQIANPDLSGKLLPKYSEHMKMWGKKDSAFCQMVHDKLTELVQLAKTSKQKSRSYSFESMNRDKRQFLHESCEHFGCESQAYDQEPKRNVVATAVKDKCWLPSYSLLELLQRENGQRKVPGPMLNKSKVATERSMDSLQLNTKKSLKPLPTTSASPSRSPEPEIDYFNYKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01468519;
80% Identity
-