Ttex016323.1
Basic Information
- Insect
- Torymus texanus
- Gene Symbol
- RFX7
- Assembly
- GCA_036873485.1
- Location
- JAYJLV010028448.1:2601-5319[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.18 6.5e+03 -0.2 0.0 18 34 28 44 19 50 0.78 2 2 1.5e-34 5.4e-30 105.8 0.1 3 78 152 227 150 228 0.97
Sequence Information
- Coding Sequence
- aTGAGTACTGGAAATCAGAATAACACACCATCACCACCAAAGCTCGAGAGCGTCAGGATCAAAGAGGAACAAACAGAGTTGGTCTCAGATGCTAGAGTCCAGGTGCAGCAGAAGTATTTGCATACCTGTTCCATACCATCTTCTCTTACTTGTGATAATGGCTTTCATTCTGGAGATCTACTAcaagatttcttaaaaattaataataaacattctaACTTTGTTCATACTCCTACAGCTAAGCATGAAAAACTACGACTCATGATTGAAGACAGTATCAGCCAAGAATCAAGATCTCGAGTGCAAAAGGTTTTTTCTCAAGTAGAACAGCTAAAAATAGAGGAGAAATTATTACTCTATTTGAAACTTCCAATATCTCTGACAAATAATAGCAATACTGTAGATCCATTAAGACAACCCTTAAATCCATTAGGTAATCGCTATGAGATTCATCAAACAATCATGTGGATTAAAACACATTTGGAAGAGGATCCAGAAGTTTCTTTACCAAAGCAAGAAGTATATGATGAATATaatctattttgttctaaaaattCCATGAAGCCTTTATCCACTGCTGATTTTGGAAAAGTGATGAAACAAGTTTATCCTCGTGTTCGTCCTCGCAGACTTGGTACACGTGGCAATTCCCGTTATTGTTATGCTGGAATgcgaaaaagaattaaattagaTGCTCCAACATTACCCCTTGCAAGTGGTGTTACTGAGTTAACGTTCAATCCAGATGTTTTGGATGATTTTGAACCAATTCTGACCTACTCTGTGTAG
- Protein Sequence
- MSTGNQNNTPSPPKLESVRIKEEQTELVSDARVQVQQKYLHTCSIPSSLTCDNGFHSGDLLQDFLKINNKHSNFVHTPTAKHEKLRLMIEDSISQESRSRVQKVFSQVEQLKIEEKLLLYLKLPISLTNNSNTVDPLRQPLNPLGNRYEIHQTIMWIKTHLEEDPEVSLPKQEVYDEYNLFCSKNSMKPLSTADFGKVMKQVYPRVRPRRLGTRGNSRYCYAGMRKRIKLDAPTLPLASGVTELTFNPDVLDDFEPILTYSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01465920;
- 90% Identity
- iTF_01469395;
- 80% Identity
- -