Tsin010548.1
Basic Information
- Insect
- Torymus sinensis
- Gene Symbol
- -
- Assembly
- GCA_030522985.1
- Location
- JAPYZP010006827.1:10816-17087[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2 4.7e+02 3.4 0.2 1 12 184 195 184 201 0.91 2 15 0.045 10 8.6 0.2 2 23 214 238 213 238 0.93 3 15 0.00057 0.13 14.6 1.5 2 22 260 280 259 280 0.93 4 15 0.084 19 7.8 0.3 1 23 289 312 289 312 0.89 5 15 0.0015 0.34 13.3 4.1 1 20 321 340 321 342 0.95 6 15 0.37 86 5.7 4.5 2 23 351 373 350 373 0.95 7 15 0.064 15 8.1 3.8 1 22 383 404 383 404 0.96 8 15 0.35 80 5.8 0.1 1 20 536 555 536 557 0.81 9 15 2.4 5.6e+02 3.2 5.9 1 23 565 588 565 588 0.95 10 15 0.014 3.2 10.2 1.8 2 22 598 618 598 618 0.95 11 15 8.9e-05 0.021 17.1 2.6 1 23 626 649 626 649 0.97 12 15 0.028 6.4 9.3 0.5 1 21 659 679 659 680 0.94 13 15 7.1e-05 0.016 17.5 4.8 2 23 688 710 687 710 0.97 14 15 0.003 0.7 12.3 2.6 1 21 760 780 760 781 0.95 15 15 2.8e-05 0.0063 18.7 2.6 1 23 789 812 789 812 0.98
Sequence Information
- Coding Sequence
- atGGAGAAGAAAAGTAAAGAATTGCCAACGGAGAAAGTAGGaaacaaggaagaaaaaaaggcagCCCAAAAAGAAATTGGAACTATAACTTTGGaaggtAATGCTACCAACTCAAGCCAAAGTCAAAAGGAGAACCAAAATGTTACAATCACAGAGGAGAAGGATCCGCTGAATGTTACCGAAACTAAACAAAGTGATCAACTGAATGAATTTACAGAAGagaaagaTCCCCTTATCTTTGACGAAACAAGTAAAAGTTATAGTATATCAGATTCAATGTCACTCGAAAAAGATCCCCTGGACTTTGACGAAGATTCCAGACAGCAATCAATTATAAAAGAAGAACTTCAGATTGCTGGTGATTTCGACTACCTAGTACTGACGGACTGTTCAATGGACACATTATCAACAAATGAATTTGTTCCAATGAGAAGCGCAATATTGGGTCAACAGACGGACCTGCTCTGCTCGAATTGCGGCATCCTGGGTCACGACTACTCCAGAGCGCACGGATACTACACGTGCGTGACATGCCATGCCGACCTCGTATACCGCTGCAAGGTCTGCAACGGTGAGTTCAGCCGCGGTGGCGCCATCTACCACGTGAACACCATGTGCATACCTAAGATACGCGAGAAGACATGTGACTTCCCCAACTGTGGCTTTGTCGCCAGCGACAAGGCCACGATGATCCAGCACCAAAGATCCGAGCACAGCCTCACGGCGATACCCGGCGAGAAGCTATCGTTGGCCAAAAAGGGTCTGCTGTCTTACGTAAGCTGTCACAGCTGTAACAAGCTGTTCAAGCGGCCGTCTTTCCTGCGGAAGCATCTGGAGACCTGTGGCAAGGGTGGCCGCGAGATATTCAGGTGCTCGAAGTGCCCGTACAAGTCGCGTAGGCGTGACCTGATCATCGATCATGAGGCCAACGTGCACAAGGAGATCGACCCCAGCGACTATCACAAGTGTCCGAATTGCGACAAGCGCTACAAACACGAGAAGCACATGAGGGCACACTACGAGCAGATCTGCATGAACAAAGTACTCTGCAATTGCGAGCATTGCAAGTATTCGACGTATGTCAAGATATACATGGTGAGGCACCTGAGGGTCAGGCATCCTCAGCTCTTCCCCGACGACGACAAGTTCACCTGCAGGCTCTGTGGCAGGCGGTGCTTCACACTCAGGCAACTGAGCTATCATCTCAGGAGGAACAAGTGTCCCAAGGTCAAGCCGTCAGGGGACAATCTCCAGACTGACAAGGGAAAGTCGCAGGGTTCATTAAAAAAGATGAAAGATAAAAAGGAGactaatataaaaagaaaaggcaAAAAAGTCACAGAAAGTAAGGCCAGTGCTCATGCAATATTTATTAAGGAGGAATATGACGACAACGTGGAAGAATCTTTCCCTGTGATCGAGGAAAGCCTTACTGACGTTTCAGAAACTAAAATTGAAGATGAAAGTACTGAAGATCCACTGAGCAAAGATAATTTAGTGTACAACGGTTACGTGCACCTGTACTGCACGACGTGCAAGGATCGCGCACCACCGACGATTCGCAGCCGCGTGGGCACGTGTCCGCGCTGCTTCAACCTCTACCATTACCAGTGTCCCACGTGCGCCAAGGTCTACGCCAGGGGCATCTCCGCGTACAAGCACGCGCGCAACATATGCGGCAAGCTGCCGCGTCATCGCTGTCCCCACTGCCCATTCGCCAGCTACAATTCCACGACCACGACCTTGCACATAAAGCACCGTCACACCCGCATCGATCCGAGCGACTACGCGACCTGTCCGAGCTGCGGCAAGCGCTACAAGCACGTGAACAAGATGCGCACCCACCTGAAGACCTGTGGTCAGGGCCCGGTGAAGTTCGTCTGCTCCCACTGCGAGCTCCAGTTCGCCAACACCTACAATCTGAAGAAGCACCAGATAATGAAACACCCGGACACCATCGAACAGCAGGCCATGCACGTTTGTCCCAACTGCTCCAAGGTTTATCTGTACAGAACGAGCCTTGAGACGCACATCAAGAACGTTTGCGGCGTAAAGCTCGTGCGCTGCGATCACTGCAAGCTGAGTACCACGAACAAGAGGAATCTGACGAAGCACATGAAGCGGATGCATCGGGAATTGTACGAGAGCACCGAAGATGCAGATCCAAGTTTCCTCTCGTGGCGCTCGAAGCTCATCCCCGAGCGTCTGacccagcagcaacagcagcagcagcagcagctacagcaGCAGGGCGTCGAAATGGCCGGCCAGCAGCGCTTTCCCTGCCCCGACTGTAGCAGCGTCTTCAGCCGCAAGTGCAACCTGTACTACCACCGGAAGTACGAGTGCGGCCAGCCGCCGCGCTTTCAGTGTCCCTACTGCCAGTACCGCACGCGACACCAGTCCAACGTGCGCGCCCACGTGCGCCGCATACACGCGGGCAAGGACGTCTTCTTCATCGACGTTGGCCTGCAGCCGTTCGACGTCGTCTGA
- Protein Sequence
- MEKKSKELPTEKVGNKEEKKAAQKEIGTITLEGNATNSSQSQKENQNVTITEEKDPLNVTETKQSDQLNEFTEEKDPLIFDETSKSYSISDSMSLEKDPLDFDEDSRQQSIIKEELQIAGDFDYLVLTDCSMDTLSTNEFVPMRSAILGQQTDLLCSNCGILGHDYSRAHGYYTCVTCHADLVYRCKVCNGEFSRGGAIYHVNTMCIPKIREKTCDFPNCGFVASDKATMIQHQRSEHSLTAIPGEKLSLAKKGLLSYVSCHSCNKLFKRPSFLRKHLETCGKGGREIFRCSKCPYKSRRRDLIIDHEANVHKEIDPSDYHKCPNCDKRYKHEKHMRAHYEQICMNKVLCNCEHCKYSTYVKIYMVRHLRVRHPQLFPDDDKFTCRLCGRRCFTLRQLSYHLRRNKCPKVKPSGDNLQTDKGKSQGSLKKMKDKKETNIKRKGKKVTESKASAHAIFIKEEYDDNVEESFPVIEESLTDVSETKIEDESTEDPLSKDNLVYNGYVHLYCTTCKDRAPPTIRSRVGTCPRCFNLYHYQCPTCAKVYARGISAYKHARNICGKLPRHRCPHCPFASYNSTTTTLHIKHRHTRIDPSDYATCPSCGKRYKHVNKMRTHLKTCGQGPVKFVCSHCELQFANTYNLKKHQIMKHPDTIEQQAMHVCPNCSKVYLYRTSLETHIKNVCGVKLVRCDHCKLSTTNKRNLTKHMKRMHRELYESTEDADPSFLSWRSKLIPERLTQQQQQQQQQLQQQGVEMAGQQRFPCPDCSSVFSRKCNLYYHRKYECGQPPRFQCPYCQYRTRHQSNVRAHVRRIHAGKDVFFIDVGLQPFDVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01465683;
- 90% Identity
- -
- 80% Identity
- -