Taio102964.1
Basic Information
- Insect
- Torymus aiolomorphi
- Gene Symbol
- lola
- Assembly
- GCA_036365515.1
- Location
- CM070876.1:168968791-168978287[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.8 1.4e+03 2.8 0.1 1 12 96 107 96 116 0.82 2 19 5.5 2.6e+03 1.9 0.1 3 23 127 150 126 150 0.86 3 19 0.0026 1.2 12.4 1.5 2 22 172 192 171 192 0.95 4 19 0.1 50 7.4 0.6 1 23 201 224 201 224 0.89 5 19 0.0025 1.2 12.4 4.2 1 20 233 252 233 254 0.94 6 19 0.052 25 8.3 4.3 2 23 263 285 262 285 0.95 7 19 0.066 32 8.0 3.8 1 22 295 316 295 316 0.96 8 19 0.2 97 6.4 0.2 1 12 448 459 448 469 0.77 9 19 2.8 1.3e+03 2.9 4.7 1 23 477 500 477 500 0.94 10 19 0.016 7.5 9.9 1.1 3 22 511 530 510 530 0.95 11 19 6.3e-05 0.03 17.5 4.1 1 23 538 561 538 561 0.97 12 19 0.0093 4.5 10.7 1.8 1 23 571 593 571 593 0.97 13 19 0.036 17 8.8 8.7 2 23 600 622 599 622 0.97 14 19 0.0089 4.2 10.7 2.6 1 21 672 692 672 693 0.95 15 19 2.8e-05 0.014 18.6 2.6 1 23 701 724 701 724 0.98 16 19 0.0027 1.3 12.4 0.7 1 21 761 781 761 782 0.95 17 19 6e-05 0.029 17.6 1.1 1 23 790 813 790 813 0.98 18 19 0.016 7.5 9.9 1.3 1 21 849 869 849 870 0.95 19 19 0.74 3.5e+02 4.7 0.5 1 23 878 901 878 901 0.87
Sequence Information
- Coding Sequence
- ATGAGTTCGGTTACTTCCGATCGGTTACTTCCGATCGGTGAGGTGAGGTTTAGACGCCCGCTTCCCGGCCTGGAAGACCTGAGGGTGAAACATATTATATACTATGGAGACCGTCGAAATTCAATTGAAGTTTCCAATATCGGTCCGGCTGTATCTAAAATTCGCCCTGTTTCAGTATTGGCTCAACAGACGGACCTGCTCTGCTCGAATTGCGGCATCCTGGGCCACGAGTACCCCAGGAAACACGGGTTCTACAGGTGCGTGACGTGCCAGGCCGACCTCTTCTACCGCTGCAAGGTCTGCAACGGCGAGTTCAACCGTGGTGGTGCCATCTACCACGTGAACACCATGTGCATACCTAAGATACGCGAGAAGGCATGTGACTTCCCCAACTGTCGCTTTATTGCCAGCGACAAGGCCACGATGATTCAGCATCAAAGAGCCGAGCACAGCCTCACGGCGATACCCGGCGAGAAGCTATCGTTGGTCAGAAAGGGTCTGCTATCTTACGTAAGCTGTCACAGCTGCAACAAGCTGTTCAAACGGCCGACTTTCCTGGCAAAGCATCTGAAGACCTGCGGCAAGGGTGGCCGCGAGATATTCAGGTGCTCGAAGTGCCCGTACAAGTCGCGTAGGCGCGACCTGATCATCGATCACGAGACGAACGTGCACAAGGAGGTCGACCTTAGCGAGTATCATAAGTGCCCGAATTGCGACAAACGCTACAAACACGAGAAGCACATGAGGGTGCATTACGAGCAGATCTGCCAGAATAAAGTGCTCTGCAATTGCGAGCACTGCAATTATTCGACGTACGTCAAGATATACATGGTAAGGCACATGAGAGTCAGGCATCCTCAGCTCTTCCCTGACGACGACAAGTTCACCTGCAGGCTCTGCGGCAGGCGGTGCTTCACACTGAGGCAACTGAGCTATCATCTCAGGAGGAACAAGTGTCCCAAGGTCATGCCGTCAGGGGACACTTTACAGACTGACGAGGGAACGTCGCAGGGTCCATTAAAAAAGGGGAAAGATGAAAAGGAGActaatataataagaaaaagcaaaaCTGTCACAGAAAGTAAGGCCAGTGCTCATGCAATATTTATTAAGGAGGAATATGATGACAACGTCGAAGAATCTTTCTCTATTACCGAGAAAAGCCTTACTGACGTTCCAGAAAGTAAAATTGAAGATGAAAGTACTGAAGATCCACTGGGAAAAGATAATTTAGTGTACAACGGCTACGTGCATCTGTACTGCGCCACGTGCAAGGAACGCGCACCCCCGACGATTCGCAACCGCGTGAGCACCTGTCCGCGCTGCTCCTGCCTCTACCATTACCAGTGTCCCACGTGCACCAAGGTCTACGCCAAGGGCATCTCCGCGTACAAACACGCACGCAACGTATGCGGACAGCTGCCACGTCACCGCTGTCCCCACTGCCCATTCGCCAGCTACAATTCCGCGACCACGTCCTTACACATAAAGCACCGTCACACCCTCATCGATCCGCAGGACTACGCGGCCTGCCCGAGCTGCGGCAAGCGCTACAAGCACGTGAACAAGATGCGCACCCACCTGAAGACCTGTGGTCAGGGCCCGGTGAAATTCAACTGCTCTCACTGCGAGCTCAAGTTCACCAAGCCCTACGATCTCAAGAAGCACCAGATGATGAAGCACCGGGAAACCATCGATCAGCAGGCCATGCACGTCTGTCCCAACTGCTCCAAGATTTATCTATACAGAACGAGCCTCGAGACGCACATCAAGAGGCACTGCGGGGTCACGATGGTGCGGTGCTGTCACTGCAAGCTACATTCCACGAGCAAGTGGAATCTGACGAAGCACATGAAGAGGATGCATAAGGAATTGTACGAGCGCAGCGAAGATATAAATCCAAGTTTCCTCTCGTGGCGCTCGAAACTCATCCCCGAGCGTCTAAcccagcagcaacagcagcagcagcagcagctacagcagcAGGGTGTCGAGATGGCAGGCCAGCAGCGCTTTCCCTGCCCCGACTGCAGCAGCATCTTCAGCCGCAAGTGCAACCTCTACTACCACCGGAAGTACGAGTGTGGCCAGCCGCCGCGCTTTCAGTGTCCCTATTGCCAGTACCGCACGCGACACCAGTCCAACGTACGCGCCCACGTGCGCCGCATCCACGCAGGCAAGGACGTCTTTTTCATCGACGTCGGCCTGCAGCCGTTCGACGTCTACACCGGTGAGCGGCTGCAGTCCAACCGCAGGCCGCGCACCAAGCCGAATCAGACGTTCAACTGTTCGAACTGCCCGTCGGCCTTCTCCCTGCTCTCGTCGCTGCGTCGTCACATCAAGCACCAGTGTGGCCAGCCGCCGCGTTATAAGTGTCCCTACTGCCAGTACCGAACGCGATACCAGTCGAACGCGCGCGCTCACGTGAGATCCGTGCACGCGGGCCAAGACGTCTACATCGTCGACGTAGGCCGGCAGGCTTTCGACTTCTCTGGTGATCCTCTGCAGCCCAGTCGCAGGCAGCGCAAGACGCCCAGCCAGACCTTCGATTGTCTGAACTGCCCGTCTGCCTTCTCCTCGCACCTGTCGTTGCGACGTCACATCAGACACGAGTGTGGCCGCGAGCCCCAATTTCACTGTCCCTACTGTCCGTACAAGGGCAAATGGAAGCCGAACGTCAAGCGCCACGTGATCGGTGTGCACAAGAATCAGCCCGTCACGGTCATCGACGTAATGCAGCCGACAAGCGAAGAGTCAGCGCCCGTCGAAGAATTCATCATATAG
- Protein Sequence
- MSSVTSDRLLPIGEVRFRRPLPGLEDLRVKHIIYYGDRRNSIEVSNIGPAVSKIRPVSVLAQQTDLLCSNCGILGHEYPRKHGFYRCVTCQADLFYRCKVCNGEFNRGGAIYHVNTMCIPKIREKACDFPNCRFIASDKATMIQHQRAEHSLTAIPGEKLSLVRKGLLSYVSCHSCNKLFKRPTFLAKHLKTCGKGGREIFRCSKCPYKSRRRDLIIDHETNVHKEVDLSEYHKCPNCDKRYKHEKHMRVHYEQICQNKVLCNCEHCNYSTYVKIYMVRHMRVRHPQLFPDDDKFTCRLCGRRCFTLRQLSYHLRRNKCPKVMPSGDTLQTDEGTSQGPLKKGKDEKETNIIRKSKTVTESKASAHAIFIKEEYDDNVEESFSITEKSLTDVPESKIEDESTEDPLGKDNLVYNGYVHLYCATCKERAPPTIRNRVSTCPRCSCLYHYQCPTCTKVYAKGISAYKHARNVCGQLPRHRCPHCPFASYNSATTSLHIKHRHTLIDPQDYAACPSCGKRYKHVNKMRTHLKTCGQGPVKFNCSHCELKFTKPYDLKKHQMMKHRETIDQQAMHVCPNCSKIYLYRTSLETHIKRHCGVTMVRCCHCKLHSTSKWNLTKHMKRMHKELYERSEDINPSFLSWRSKLIPERLTQQQQQQQQQLQQQGVEMAGQQRFPCPDCSSIFSRKCNLYYHRKYECGQPPRFQCPYCQYRTRHQSNVRAHVRRIHAGKDVFFIDVGLQPFDVYTGERLQSNRRPRTKPNQTFNCSNCPSAFSLLSSLRRHIKHQCGQPPRYKCPYCQYRTRYQSNARAHVRSVHAGQDVYIVDVGRQAFDFSGDPLQPSRRQRKTPSQTFDCLNCPSAFSSHLSLRRHIRHECGREPQFHCPYCPYKGKWKPNVKRHVIGVHKNQPVTVIDVMQPTSEESAPVEEFII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01468314;
- 90% Identity
- -
- 80% Identity
- -