Tsin013725.1
Basic Information
- Insect
- Torymus sinensis
- Gene Symbol
- -
- Assembly
- GCA_030522985.1
- Location
- JAPYZP010009834.1:996-3641[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.056 13 8.3 0.0 1 23 178 200 178 200 0.94 2 12 1 2.4e+02 4.4 0.5 2 19 203 220 202 222 0.88 3 12 8e-06 0.0018 20.4 3.6 2 23 266 287 265 287 0.97 4 12 5e-05 0.012 17.9 0.2 1 23 293 315 293 315 0.98 5 12 0.00031 0.072 15.4 1.9 1 23 321 343 321 343 0.98 6 12 0.00011 0.024 16.9 2.0 1 23 349 371 349 371 0.98 7 12 0.00016 0.038 16.3 1.5 1 23 377 399 377 399 0.98 8 12 2.9e-07 6.7e-05 25.0 0.5 1 23 407 429 407 429 0.98 9 12 0.0048 1.1 11.7 0.2 1 23 435 457 435 457 0.94 10 12 1.5e-06 0.00036 22.7 2.3 1 23 463 485 463 485 0.98 11 12 1.2e-05 0.0027 19.9 0.6 1 23 491 513 491 513 0.98 12 12 7.4e-06 0.0017 20.5 3.4 1 23 519 541 519 542 0.96
Sequence Information
- Coding Sequence
- ATGATAGCTCCATGGTCTAAGTGGTTGATTGTCAGTCAGTCGGCCCGGGTCTCGAATCAAGAAATCGCCATGCACCTGGAATCTGTAACCGTGGAGAACCTCACGGTGGGTGCGCATCTCAGTCAACTGGACATCAACTACGTCACCTCCATGGCCTCACAGCCCCACGAACCCCAAAAGCAACAGATCGTACGCTACTGCGACAGCGTGAAATTCGAGCAAGTGCCCGACCGCGGCGATCTGTCGACCGCACTCAACGGCTGCGAAGCACCAACGACACAGcaacaccagcagcagcagccgcggagTTTCGCCTCGTCCAGGGCGACGAGCGACATGGACGATCCCTGCGAGGACCCGTTGAACGTGCAGGACACGTCGGCGCACTCGTTCTCTCTGCCGTCCACGAGTCACCATAACGACGCGGATAATACGGACGGGATAATGGTGCAGTATACGAAGAGGAGCAAAAACGCACTGCTCGAGAGTGCGCTGAATAATCCTACGATTGATGAGACTGAAACTAATTGGTACATTTGTCCATTTTGCAACGAAGCCGCCTCAGAACCCAACAACCTCGCCGATCACTTCGAGCAGCACTTTTGCACGTGTCCCAATTGCGAACTGTACTTTACTAGCATCGAAGTATTAAACCTTCATAATCAAGACTGCATCGAAAGAAAGCATAAAGTTAACGACGCAAAAAATATAGCGGGGTCGTCGCAAACTTCACCGAAAAAGCAACAGCCGAGTGAGAAAAAAACAGCGGGTACGCGGCCTAAGTGGACTCCAAAGGAGTGTGTTCATTGCGGCAAACAATATCGAACAAATTATAAACTTCAGGAACACATGCGCAAGCATACGGGCGAAAAACCATACCAGTGCATGGTCTGCGAGAAGGCATTCCGCAGCAAGATCGGTCTGGCCCAGCACACGGCCACCCACACTGGTCAGTTCGACTACAGCTGCGAGACGTGCGGCAAAGGCTTCCAGTGCAAGAGTTACCTCGTCGTCCATCAGCGTGTCCACTCTAACATCAAGCCCTACTCCTGCACCACGTGCGACCAGAACTTTAAAACGAAGCAGTCGCTCCTCGATCACGAGAATCGGCATATGGGTGTTAAACCATACACGTGCGAGATTTGCGGCAGAGGGTTCATTACGAAAGGTCTTTGCAAGAGTCATCAAAAGATACACTCAGGGTTGGATAATAGACAGTATCCCTGCGTCATTTGTAATAAGATGTTCGTGAGCAAGAGCTACCTCAATACGCATCTGCGGATACATACCGGGGAAAAGCCGTATTTATGCGAGGTCTGTGGCAAAGGATTCTTAACACGAGTGGACCTCAAGATCCACTCGACGATGCATACCGGTGAAAAAAGCTTCAAGTGCGACATATGTGGCAAAGTGTTCGCAAGACAATCGGCTTTACGCTGCCACAGACGTTCGCATACTGGAGAACGACCGTATCGCTGCGATATATGCGGCAAAACCTTCACGCAGTTCAGCCCCATGGCGATACACAAGAGGCTGCACACAGGCGAACGGCCATACGAGTGCGACGGGTGCGGCAAGAGATTCGTCTCGCGCTCGACGATGACAAGCCACAAGAAGAAACACCACGCGGCCAGTCTCGAGCTAAAGCCCGCCGTTGCCAGTACGACGACCGGTACGGCGGAGGAAACGCCGAAGGAAGTTGATGCGAAGAATGTGCAAGGGGCACAGGAAGTTGTCATGGCCAACGTTGTCACGGATTGA
- Protein Sequence
- MIAPWSKWLIVSQSARVSNQEIAMHLESVTVENLTVGAHLSQLDINYVTSMASQPHEPQKQQIVRYCDSVKFEQVPDRGDLSTALNGCEAPTTQQHQQQQPRSFASSRATSDMDDPCEDPLNVQDTSAHSFSLPSTSHHNDADNTDGIMVQYTKRSKNALLESALNNPTIDETETNWYICPFCNEAASEPNNLADHFEQHFCTCPNCELYFTSIEVLNLHNQDCIERKHKVNDAKNIAGSSQTSPKKQQPSEKKTAGTRPKWTPKECVHCGKQYRTNYKLQEHMRKHTGEKPYQCMVCEKAFRSKIGLAQHTATHTGQFDYSCETCGKGFQCKSYLVVHQRVHSNIKPYSCTTCDQNFKTKQSLLDHENRHMGVKPYTCEICGRGFITKGLCKSHQKIHSGLDNRQYPCVICNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCDICGKVFARQSALRCHRRSHTGERPYRCDICGKTFTQFSPMAIHKRLHTGERPYECDGCGKRFVSRSTMTSHKKKHHAASLELKPAVASTTTGTAEETPKEVDAKNVQGAQEVVMANVVTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01467384; iTF_01466517;
- 90% Identity
- iTF_01467384; iTF_01466517;
- 80% Identity
- -