Tger003099.1
Basic Information
- Insect
- Torymus geranii
- Gene Symbol
- -
- Assembly
- GCA_900474355.1
- Location
- UCWB01004401.1:8782-10949[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.015 2 9.9 0.0 1 23 188 210 188 210 0.94 2 12 1 1.3e+02 4.2 0.2 2 20 213 231 212 233 0.89 3 12 6.9e-06 0.0009 20.4 3.6 2 23 276 297 275 297 0.97 4 12 3.9e-05 0.0051 18.0 0.1 1 23 303 325 303 325 0.98 5 12 0.00039 0.05 14.9 2.1 1 23 331 353 331 353 0.98 6 12 1.6e-05 0.0021 19.3 2.5 1 23 359 381 359 381 0.98 7 12 0.00014 0.018 16.3 1.5 1 23 387 409 387 409 0.98 8 12 2.5e-07 3.3e-05 24.9 0.5 1 23 417 439 417 439 0.98 9 12 0.0042 0.54 11.7 0.2 1 23 445 467 445 467 0.94 10 12 1.4e-06 0.00017 22.7 2.3 1 23 473 495 473 495 0.98 11 12 1e-05 0.0013 19.9 0.6 1 23 501 523 501 523 0.98 12 12 7.9e-06 0.001 20.2 3.6 1 23 529 551 529 552 0.96
Sequence Information
- Coding Sequence
- atgctgTTATTCAATATTGGGTTTAAtctttattgtaaaaagaacTTGAATACCTCTAAACTTTGTAAATCATTTCTCCAGGTCTCAAATCAAGAAATCGCCATGCACCTGGAATCTGTAACCGTAGAGAACCTTACCGTGGGTGCGCACCTCAGTCAGCTGGATATCAACTACGTCACCTCCATGGCCTCACAGCCCCACGAACCCCAAAAGCAACAGATCGTGCGCTACTGCGACAGCGTGAAATTCGATCAAGTGTCCGACCGCGGCGACCTGTCGAACGGACTCAACGGCTGCGAAGCGCCAACGACACAGCCacaccagcagcagccgcgaaGTTTCGCCTCGTCCAGGGCGACGAGCGACATGGACGATCCTTGCGAGGACCCATTGAACGTGCAGGAAACGTCCacgcactctttctctctgccgtcCACGAGTCATCATGTTGACGCGCATAATACCGACGGGATAATGGTGCAGTATACGAAAAGGAGCAAGAACGCGCTGCTCGAGAGTGCGCTGAATAATCCTACGATTGACGAGACTGAAACTAATTGGTACGTTTGTCCATTTTGCAACGAAGCCGCCTCAGAACCCAATAACCTCGCCGCCCACTTTGAGGAGCACTTTTGCACGTGTCCCAATTGTGAACTATACTTTATTAGCATCGAAGTATTAAACCTCCATACTCAAGAGTGCATCGAAAGAAAGCATAAAGTTAACGATGCAAAAAGTATAGCGGGGTCGTCGCAAACGACACAGAAAAAGCAACAGATGAGTGAGAAAAAAACAACGGGTTCGCGGCCTAAGTGGACTCCAAAGGAGTGTGTTCATTGCGGCAAACAATATCGAACAAATTATAAACTTCAGGAACACATGCGCAAGCATACGGGCGAAAAACCATACCAGTGCGTGGTCTGCGAGAAGGCATTCCGTAGCAAGATCGGTCTGGCCCAGCACACGGCCACCCACACTGGTCAGTTCGACTTCAGCTGCGAGACGTGTGGCAAAGGCTTCCAGTGCAAGAGTTACCTCGTCGTCCATCAGCGTGTCCACTCCAACGTCAAGCCCTACTCCTGCAACACGTGCGACCAAAACTTTAAAACGAAGCAGTCGCTCCTCGATCACCAGAATCGACATATGGGTGTTAAACCATACACATGCGAGATTTGCGGCAGAGGGTTCATTACAAAAGGTCTGTGCAAGAGTCATCAAAAGATACACTCAGGATTGGATAATAGACAGTATCCCTGCGTCATTTGTAATAAGATGTTCGTAAGCAAGAGTTACCTCAATACGCATCTGCGGATACATACCGGAGAAAAGCCGTATTTATGCGAGGTCTGTGGCAAAGGATTCTTAACACGAGTGGACCTCAAGATCCATTCGACGATGCATACCGGTGAAAAAAGCTTTAAGTGCGACATATGCGGCAAAGTGTTCGCAAGACAATCGGCTTTACGCTGCCATAGACGTTCGCATACCGGAGAACGACCGTACCGCTGCGACATATGCGGCAAAACCTTCACGCAGTTCAGTCCTATGGCGATACACAAGAGGCTGCACACGGGCGAGCGGCCATACGAGTGCGACGGGTGCGGCAAGAAGTTCGTCTCGCGCTCGACGATGACGAGCCATAAGAAGAAGCACCACGCGGCCAGTTTGGAGGTAAAGTCTGCAGTCGCCACTACGACCGGTACGGCGGAGGAAACGCCGAAGGAAGTTAATGAGAAGGGCGTGCAAAAGACACAGGAAGTGGGCATGGATAACGTTGTCGCCGATTGA
- Protein Sequence
- MLLFNIGFNLYCKKNLNTSKLCKSFLQVSNQEIAMHLESVTVENLTVGAHLSQLDINYVTSMASQPHEPQKQQIVRYCDSVKFDQVSDRGDLSNGLNGCEAPTTQPHQQQPRSFASSRATSDMDDPCEDPLNVQETSTHSFSLPSTSHHVDAHNTDGIMVQYTKRSKNALLESALNNPTIDETETNWYVCPFCNEAASEPNNLAAHFEEHFCTCPNCELYFISIEVLNLHTQECIERKHKVNDAKSIAGSSQTTQKKQQMSEKKTTGSRPKWTPKECVHCGKQYRTNYKLQEHMRKHTGEKPYQCVVCEKAFRSKIGLAQHTATHTGQFDFSCETCGKGFQCKSYLVVHQRVHSNVKPYSCNTCDQNFKTKQSLLDHQNRHMGVKPYTCEICGRGFITKGLCKSHQKIHSGLDNRQYPCVICNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCDICGKVFARQSALRCHRRSHTGERPYRCDICGKTFTQFSPMAIHKRLHTGERPYECDGCGKKFVSRSTMTSHKKKHHAASLEVKSAVATTTGTAEETPKEVNEKGVQKTQEVGMDNVVAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01468246;
- 90% Identity
- iTF_01468246;
- 80% Identity
- -