Tsin015682.1
Basic Information
- Insect
- Torymus sinensis
- Gene Symbol
- -
- Assembly
- GCA_030522985.1
- Location
- JAPYZP010011890.1:3570-4469[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.8e-16 3.8e-12 47.5 0.1 8 70 91 152 86 157 0.89
Sequence Information
- Coding Sequence
- ATGTCTTTTtggaagaatataaaaaatgctgaTAGTTTGATAGaagaaattgatgaaaatactaCAGACTCTGAAGATCATAAACTTAATATAGAATCAGATATTTGTAATATAACTGCGGATGAATCTtcattaaaatcagaaaaatcaGCAATTAGTAGCGTATCTGTAAGTTCAAATAAATCGAGGAAAAGCAGATCTTCAAGAGGAGCAAGTCCTGGTATTGCCATACGCCAAAAAGTTTCAGTAGATATCACCAATCCTGCTTACCGAGAGCCATTTAGTTATGGATGGAAACGGGAACTTGTATACAGAGCTGGAGGCTCAGAAAACCAAGCAAGACGAATGgctgatatttattattatacaccaGAAGGAAAGAAAGTCAGAAGTTACCGTGAAGTAATCGAGTTTCTTACAACGAGTGAACTAACGAttgataattttacatttttcaaagaacCTCTTGGAGTTAACGACCCGGAGAAAGAAATCATTCGCGACGCTAAGAAACCAAAAGACTCATTTggcaataaatttataacaaaatccTCCAAGAAAAATATCGAAGGATTCTCTTCgagaaaaaaacagaaaaaaggaTTAGATAAAACTAGTCTAACGCCAGTGCTATTGAAAACATCCCCTAAGTCTACTAAAATACCTGGGACATTTAAGGTTAAATTGCCAGCTAAGAAAACCACGCTAAGGAGTGAGTTCTTATGTATTTACGTAGAGTAG
- Protein Sequence
- MSFWKNIKNADSLIEEIDENTTDSEDHKLNIESDICNITADESSLKSEKSAISSVSVSSNKSRKSRSSRGASPGIAIRQKVSVDITNPAYREPFSYGWKRELVYRAGGSENQARRMADIYYYTPEGKKVRSYREVIEFLTTSELTIDNFTFFKEPLGVNDPEKEIIRDAKKPKDSFGNKFITKSSKKNIEGFSSRKKQKKGLDKTSLTPVLLKTSPKSTKIPGTFKVKLPAKKTTLRSEFLCIYVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01465191;
- 90% Identity
- iTF_01465191; iTF_01469685; iTF_01467096; iTF_01466216;
- 80% Identity
- -