Tsin005491.1
Basic Information
- Insect
- Torymus sinensis
- Gene Symbol
- -
- Assembly
- GCA_030522985.1
- Location
- JAPYZP010002799.1:7327-8953[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-11 4.5e-08 34.5 0.2 2 44 15 56 14 57 0.92 2 2 5.4 6.4e+03 -1.2 0.0 12 23 128 142 126 143 0.72
Sequence Information
- Coding Sequence
- ATGAGCACGAATTCAAAGAAAAAGATACGGATACTATACAGCAGGGAGACCCTGAAGGAGGCCATGGCTGCGATCCATGCCGGCATGTCGATCAACACCGCGAGCAATAAATACCACATTCCCAGGTCGACCCTGCAGAGCAAGAAGGTGGGCAAGTACGCGGACAAGCGACCCGGGCCCGATACCGTGCTCACTACCACGGAGGAAGCCTCATTGGTCCAGTGGATAATCAGCTGCAGCAAGTGTGGCATGGCTGTTGGCAAACAGCATTTGCTCAACAGCGTTGCTCTCATGGTGAAGTTACTGAACAGGGAGAATCCATTTGCCAATGGTCGACCAGGTAGACATTGGTACCAGGGCTTTTTGCGACGGCATGAGTATGTTATGGAAAAGATAACAGAGAATACTTCCATTGCCAGAGCAGCAGCTTGCGAGGCAGGCATAAGAAAGTGGTTTTCAGTTGTCGAGTCATATTTGGAAGAGCGAGGTCTGTTGAATGTTCAGTCTTCAAGAGTATTTAGCATGGAAACAGTATTGTTGGCATATCCAGAAACTGGTGAATCTAGCAAAAACTTATCTGTACAAGTTGCTGCTAATGCAGCTGGAGAATTGGCACCTCCAATGATAATGTATAATTATCAGAGGGTGCCTGGAAAAGTGTATGAAAATCTTTCCCAGCTATGGTTTTGCGGAAAATCTGAGAGTGAATGCATGACACCGGAAAATTTATTTGACTATGTGACAAAGTGTTTTTATCCATGGCTAGTCGAAAGAAAAGTTGAATTTCCTGTTCTATTGTTCCTTGATGGTAAAGTACCACATCTGACTCTAACACTAAGTGATTTttgttggaaaaataaaattgaactgGTAGCTCTGCAACCAAATGCTTCATTTGTACTTCAACCATTAGAGGTGACATTATTTCCGTTATTAAAGGATGCTTGGCAAGAAGCACTCAGCAGGTACTGTACAGAAACCAAGACTGTTAATTTATTGAAAGAACAAATAGCTTCCATATTTAAATCAGTAATCGATGGATTTGAtcttgttaaaattttaaaagaaggtTTCCAAAATAGTGGATTGTATCCATGGtcagaaaaagtaattaattatgaGAAAATACCTAAAAGAGAAGTGGAAAAAGTACCAACAGAACGTATAGAGTACACACCATATGTACCAGAATTCACACCATCACTAGAAGTACAAGAATTTGTAAAAGATTCTGGTGTGACAATggaatttttacagtattttgaACAATCGCTTGATTCCGATACATtacaagcatttaaaaatgttcaagaaTATGATGAATGGACTGGAAAATTAGAAGACACTGGTCTATTTTACTTTTGGAGAAAAATTGTTAACTTATGTAAGACTGATCAAATGAAACTAGATCAAAATACTGTTTCTACTATCTATACTATAGACAGTATTAATTTTGAAGAGACTGATATTCACTCCGATTTGAATGAAACTAAAGATATGGAATTTATTGAAGATCCCTTGAAGTTATGTATAACTCAAATGGAAGAATCttaa
- Protein Sequence
- MSTNSKKKIRILYSRETLKEAMAAIHAGMSINTASNKYHIPRSTLQSKKVGKYADKRPGPDTVLTTTEEASLVQWIISCSKCGMAVGKQHLLNSVALMVKLLNRENPFANGRPGRHWYQGFLRRHEYVMEKITENTSIARAAACEAGIRKWFSVVESYLEERGLLNVQSSRVFSMETVLLAYPETGESSKNLSVQVAANAAGELAPPMIMYNYQRVPGKVYENLSQLWFCGKSESECMTPENLFDYVTKCFYPWLVERKVEFPVLLFLDGKVPHLTLTLSDFCWKNKIELVALQPNASFVLQPLEVTLFPLLKDAWQEALSRYCTETKTVNLLKEQIASIFKSVIDGFDLVKILKEGFQNSGLYPWSEKVINYEKIPKREVEKVPTERIEYTPYVPEFTPSLEVQEFVKDSGVTMEFLQYFEQSLDSDTLQAFKNVQEYDEWTGKLEDTGLFYFWRKIVNLCKTDQMKLDQNTVSTIYTIDSINFEETDIHSDLNETKDMEFIEDPLKLCITQMEES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01469578; iTF_01466123; iTF_01468751; iTF_01464982;
- 90% Identity
- iTF_01464982;
- 80% Identity
- -