Tsin022915.1
Basic Information
- Insect
- Torymus sinensis
- Gene Symbol
- lov
- Assembly
- GCA_030522985.1
- Location
- JAPYZP010021203.1:3414-5881[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-06 0.0013 20.2 0.0 1 37 205 241 205 248 0.86 2 4 3e-12 3.6e-09 38.1 0.0 3 39 257 292 255 299 0.88 3 4 2.8e-05 0.033 15.8 0.0 7 34 313 339 310 345 0.91 4 4 6.5e-12 7.8e-09 37.0 0.0 5 41 371 407 369 410 0.92
Sequence Information
- Coding Sequence
- ATGGCCGAGAGGTCCAGCAGCAGTGCCGGTAATGCGGACAGTGAATCGGGCACTCAGTACTGCTTCAAATGGAGCAATTACCAGAGCCACTTGGCGGAGGTGATGAGGGAGCTCCTCGACGAGGAGTCCATGGTCGACGTTACCATTTCGGCCGGCGGCGAACGTATACAGGCGCATCGACTGGTACTTTGCGCCTGCAGCAGCCTATTTGCGgATCTATTATGCAATGTAAATGAGGAACATTCTACCATAATCCTCAGTGATATTGCTGCACAGGATATAAGATCAATTGTAGAATTTAGCTACAATGGAGAAGTTAGAATACCTGTAGACAACATTAATAATCTGCTACAAGCAGCACATTTTCTAAAGATATATGGTTTAATGGAAATTGAAGGCCTTGATGAGACTGAAGTTTCTAATGAAAAAGATAACTCTGCCGAAGAAACTTATCTTCTTGAAGAAACTGTAGACTCTGAAGATGAGAAACAAGTATATGGAAAAGGAAATATTAAGAAGaatgaagaaaagaaaagaaagtattCAGATTCTGAAACAAATCTAAAATATACTCACATAAAAAGACGAAAGAGTGTATCTAAGAGAGATTACACTGATGATATGTTGAAATCTGCTCTGGATGAAATTCGCAAAGGAGGCACACTTCTTGAAGCAGCTTCCAAACATCGTATACCTAGGTCTACTCTATACATGCGAGCAAAGGCTCTTGGTGTACCATTGAATCCATGTAGAAACGAATACACGCTTGATGATATGAAGCAAGCTATAGAGTCTGTCAtaacTGGATCTAGTTTACAGCAAGCTGCAGATATGCATGGCATACCAAAAACAGTTTTATGGAGGAGAATCCAAAAAGAAGGTTACAGATCTAATAGGCATGACACCAGAAAAAATTATGCTCCTGCCAGAAGAGAAGCTGCTGTAAAAGCTTTACAGAGAGGAGAAGGCCTTACCAAAGTTGCAAATGAATATAATatcccgaaaacaacgctaTTCAGGGACAAAGCTCGTCTTGTTGACCAGGGAAAATTGCCTTCAACTTATTGGAAACGACGTAAAACCGATGGAGAGGACCATAAACAAGTACGTCTTGAAGAAGCTGTGGCTGCCTGCAAAAACGGTAAAATGTCTCAAGGTACAGCTGCTGCTACTTATCACATACCTAAAACTACTATTTGGAGACGTCttcaaaaagataataaaacaTCTGATTCAGATTCAAGATTCAAAAAATCACCAAAGAAGAGCGATTCTAGCGACACTAAAAATGTAGAAATAGTAAAAGCTGAAGATTTGAATGAGGCTGACTTTGAGGCATACTGTCCGgaagaaggagaagaaatgagCATAACATATATTGATGAAAGTAATATGTCAGAAGATCCGGTAATTATTCTTGCAAGTGGAGATGTTGAGGAATTGAATTTACCAAACGATAGGTCTCTGGTAGTAGTACAACAAGAAGGCACTGATGGTAATTTCATATCATGTGGATTGGAATTAGATGGTAATTCCTTTGTAGAAAAAAGCTAA
- Protein Sequence
- MAERSSSSAGNADSESGTQYCFKWSNYQSHLAEVMRELLDEESMVDVTISAGGERIQAHRLVLCACSSLFADLLCNVNEEHSTIILSDIAAQDIRSIVEFSYNGEVRIPVDNINNLLQAAHFLKIYGLMEIEGLDETEVSNEKDNSAEETYLLEETVDSEDEKQVYGKGNIKKNEEKKRKYSDSETNLKYTHIKRRKSVSKRDYTDDMLKSALDEIRKGGTLLEAASKHRIPRSTLYMRAKALGVPLNPCRNEYTLDDMKQAIESVITGSSLQQAADMHGIPKTVLWRRIQKEGYRSNRHDTRKNYAPARREAAVKALQRGEGLTKVANEYNIPKTTLFRDKARLVDQGKLPSTYWKRRKTDGEDHKQVRLEEAVAACKNGKMSQGTAAATYHIPKTTIWRRLQKDNKTSDSDSRFKKSPKKSDSSDTKNVEIVKAEDLNEADFEAYCPEEGEEMSITYIDESNMSEDPVIILASGDVEELNLPNDRSLVVVQQEGTDGNFISCGLELDGNSFVEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01466091;
- 90% Identity
- iTF_01468135;
- 80% Identity
- iTF_01468135;