Tger001945.1
Basic Information
- Insect
- Torymus geranii
- Gene Symbol
- -
- Assembly
- GCA_900474355.1
- Location
- UCWB01025012.1:536-3866[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.11 14 7.2 0.4 1 20 213 232 213 234 0.94 2 13 3.4e-06 0.00043 21.4 2.5 1 23 284 307 284 307 0.96 3 13 0.0043 0.55 11.6 6.6 1 23 338 361 338 361 0.98 4 13 0.014 1.9 10.0 2.4 1 23 395 418 395 418 0.98 5 13 2e-06 0.00026 22.1 1.8 1 23 429 452 429 452 0.97 6 13 0.00015 0.019 16.3 2.2 1 23 483 506 483 506 0.97 7 13 0.0082 1.1 10.8 1.4 2 23 519 541 519 541 0.97 8 13 0.24 31 6.1 0.4 3 21 546 563 545 564 0.86 9 13 0.12 16 7.0 2.6 2 19 572 589 571 594 0.90 10 13 2.5e-05 0.0033 18.6 3.1 1 23 605 628 605 628 0.97 11 13 0.22 29 6.2 1.9 2 20 632 649 631 651 0.91 12 13 0.00018 0.023 16.0 0.9 3 23 661 682 659 682 0.95 13 13 0.56 72 5.0 6.2 1 23 688 711 688 711 0.97
Sequence Information
- Coding Sequence
- ATGACTCCCTACCAAGTGATCGTCTACTGCAGCCGCTGCGACGAGTATTCGTTCGGTCAGCCGGACAGCCGCTGGATGAAGTGCAAAAACTGCTGGAGCCAGCTGCTCTACGAGACGACGTGCTGCAACAGGCGCTTCAAGGCGTACACTGCCGCCGTCGAACATGCGCGTATCCTCGCCTGCGAGCGTGATCCGGCCTATCAACTCAAGTGCGCCCTCTGCGCCTTCAGAACTTGCATACCCGTCAAGATGCACCAGCACGCTCTGAACGACGATGCAATAAGTATAACAAATCACGATTACGACAAAGagaaaattgaacttttcgcAGATGACCTCTGTTACATCGAAATTTCTGACACATCTGaagacgaagagaataaAGATTTTCCAGCCATCGCAATTGAAGTCCCTGATAATACAGTAACACTTCCTGTAGATAGCAAACTTGGGATTAACGAGAGTTGCCGGAATCTaatgaattcaaaaataaataacaacatgGCCAATACGAAACAAGCTCTAGAATCTGGCAGAAATAATGGATTACGTTGCTCGGCGTGCTCTTCTAAAGAAGTCCGAAATCCTAATGGTGCAAAATCTACAAAGTGCTCAAAATGCTTAGattctttaaattatcaatGCTTGAAGTGCAAGAAAAATTTGGATTCATTGAACGAGCTTTTACAACACAAGGAACAAAAAGATTGCCACCTCGAGGAAAATACTTCTGCAGATTGCAACAACACCCTTGTATCCAAGACCAGCTTGCTTTCAGCTCTCAAATTAATGTCTGTTAAGGATCTTCGCAATAATAGCAAGCCAACTGTTAAAATCAACTTGAACTCATTTCGCTGTGAGCACTGCGATTATGTCTTCAGCGATAATGGAAAGCTTACGAGACACGTGAAGCTAAAGCACAGGTATATAGATTGTTCCAAGTGCGGCCAGAAGATCAAATACTTAGAGTTCTCTAAACACAAGAAAACTATGTGCAAGTCCCAGGTTCAGTTTAAATGCTCATATTGCAATTATCAGACAAAGTACCATTGGTACTTGAAAAATCACATGCAACGCAAGCATCGTATAGTGAAAAAGATGAGCCTCAATCTGATGACCAAAGGTCTCTACGTTAGTGAAGCATCCGACAACATCGATCGGACAGCCTCCGGTAACCAAATTTACAAGTGTACGCTTTGCGGCTACACCTCACCGCACTTGAGATACGTGAAGGGCCACATAAAGAGACGCCATCTCTCGAATGACTTTGAGGAATACGAAAAATACGAGTGCGACTACTGCGGAGCTACCTATAACAACAAGACCAAGCTTCGCAGACACATGAAGCTCAAGCACGTGTACGTCAACTGTGCCAAGTGTGACAACAGCGTCAAGTTCTTCGAATTCTCGGCGCACCAGAAGAGCGGCTGCCAATCTTTGCCCCAGTACAAGTGCCCAGAGTGCGACTATCGAACCAAGCAGCGCTGGTACCTCAAGTACCACGTGCAACGCAAACACAACCAAGACCTGCCGGATGAGCCGCAAGTCACACCGAAGTGCGACATCTGCAGCTTCACAGCCGCGAACAAGTCGAAGATGCGCATGCACATGCGTCTAAAGCACGAGCAACGTGCCTGTCCAACCTGTGCGCGCAGCTTCAGGTACCCCAACTACTACCACCACCGGCGTATCTGTGGCAAAGAGGCAACCGTACGCTGCGACTTCTGCGACTTCGTTACCACCAACAACATCTACCTGAAGCGCCACTGCGCGCGCAAGCACGCCAGCAAGGACTTCGAGCAGCACGAGAGCTACAGCTGCGAGCACTGCGACTACGTGAGCAGCAAGAAGTCCAATCTGCGTAGCCACGTGCGCAATCGCCACGTGTACGTTGAGTGTGACAAGTGCTCGAAGAAGTTCAAGTGGTACTGCTTCGCACAGCATCAGCTGCTTTGCGGCTCCCGCAAGGCGTGGATTGCGTGCCAACAGTGCGATGCCACCTTCACGATGCACTCGTATCTGACCAGACACGTGCGCGAGATGCACAAGGCTAGCGGCAAACACAGTTGCGAGCATTGTGAATTTAGCTGCTGGCGCAGGTCGCTCATGGTGCGCCATCTGAAGACCGAGCACGCTTGGATCTTCGCCGTTGAACAAATCACCCGCGAGGAGATCCTCAAAGTActgttttag
- Protein Sequence
- MTPYQVIVYCSRCDEYSFGQPDSRWMKCKNCWSQLLYETTCCNRRFKAYTAAVEHARILACERDPAYQLKCALCAFRTCIPVKMHQHALNDDAISITNHDYDKEKIELFADDLCYIEISDTSEDEENKDFPAIAIEVPDNTVTLPVDSKLGINESCRNLMNSKINNNMANTKQALESGRNNGLRCSACSSKEVRNPNGAKSTKCSKCLDSLNYQCLKCKKNLDSLNELLQHKEQKDCHLEENTSADCNNTLVSKTSLLSALKLMSVKDLRNNSKPTVKINLNSFRCEHCDYVFSDNGKLTRHVKLKHRYIDCSKCGQKIKYLEFSKHKKTMCKSQVQFKCSYCNYQTKYHWYLKNHMQRKHRIVKKMSLNLMTKGLYVSEASDNIDRTASGNQIYKCTLCGYTSPHLRYVKGHIKRRHLSNDFEEYEKYECDYCGATYNNKTKLRRHMKLKHVYVNCAKCDNSVKFFEFSAHQKSGCQSLPQYKCPECDYRTKQRWYLKYHVQRKHNQDLPDEPQVTPKCDICSFTAANKSKMRMHMRLKHEQRACPTCARSFRYPNYYHHRRICGKEATVRCDFCDFVTTNNIYLKRHCARKHASKDFEQHESYSCEHCDYVSSKKSNLRSHVRNRHVYVECDKCSKKFKWYCFAQHQLLCGSRKAWIACQQCDATFTMHSYLTRHVREMHKASGKHSCEHCEFSCWRRSLMVRHLKTEHAWIFAVEQITREEILKVLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01466618; iTF_01465717;
- 90% Identity
- iTF_01466618;
- 80% Identity
- -