Basic Information

Insect: Torymus geranii
Gene Symbol: -
Assembly: GCA_900474355.1
Location: UCWB01024451.1:1287-3410[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.22 29 6.2 0.7 2 23 105 126 104 126 0.97

2 15 9.1e-05 0.012 16.9 1.7 2 23 131 152 131 152 0.98

3 15 6.9e-06 0.00089 20.4 2.5 2 23 159 180 158 180 0.97

4 15 4.7e-07 6.1e-05 24.1 1.9 1 23 214 236 214 236 0.98

5 15 0.00018 0.024 15.9 0.9 1 23 242 264 242 264 0.98

6 15 3.6e-06 0.00047 21.3 2.3 1 23 270 292 270 292 0.97

7 15 9.4e-07 0.00012 23.1 1.8 1 23 298 320 298 320 0.96

8 15 5.8e-05 0.0074 17.5 0.4 1 23 326 348 326 348 0.98

9 15 2.1e-05 0.0027 18.9 8.4 1 23 354 376 354 376 0.97

10 15 2.1e-08 2.8e-06 28.3 0.6 1 23 381 403 381 403 0.97

11 15 0.00015 0.019 16.2 0.4 1 23 409 431 409 431 0.97

12 15 1.3e-05 0.0017 19.5 6.7 1 23 437 459 437 459 0.97

13 15 3.5e-06 0.00046 21.3 0.7 1 23 465 487 465 487 0.99

14 15 2.4e-06 0.00031 21.9 0.5 1 23 494 516 494 516 0.99

15 15 9.5e-05 0.012 16.8 1.3 2 23 523 545 523 545 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.22	29	6.2	0.7	2	23	105	126	104	126	0.97
2	15	9.1e-05	0.012	16.9	1.7	2	23	131	152	131	152	0.98
3	15	6.9e-06	0.00089	20.4	2.5	2	23	159	180	158	180	0.97
4	15	4.7e-07	6.1e-05	24.1	1.9	1	23	214	236	214	236	0.98
5	15	0.00018	0.024	15.9	0.9	1	23	242	264	242	264	0.98
6	15	3.6e-06	0.00047	21.3	2.3	1	23	270	292	270	292	0.97
7	15	9.4e-07	0.00012	23.1	1.8	1	23	298	320	298	320	0.96
8	15	5.8e-05	0.0074	17.5	0.4	1	23	326	348	326	348	0.98
9	15	2.1e-05	0.0027	18.9	8.4	1	23	354	376	354	376	0.97
10	15	2.1e-08	2.8e-06	28.3	0.6	1	23	381	403	381	403	0.97
11	15	0.00015	0.019	16.2	0.4	1	23	409	431	409	431	0.97
12	15	1.3e-05	0.0017	19.5	6.7	1	23	437	459	437	459	0.97
13	15	3.5e-06	0.00046	21.3	0.7	1	23	465	487	465	487	0.99
14	15	2.4e-06	0.00031	21.9	0.5	1	23	494	516	494	516	0.99
15	15	9.5e-05	0.012	16.8	1.3	2	23	523	545	523	545	0.96

Sequence Information

Coding Sequence: ATGGATTCACAACATGTTATGGATGAAAATATTGTAAGCATTGTACTCAAGGAAGAACCAggagaaaaatacaaatcaaaCTACATGGAGGATATTTGTTTGGGGACTTTTGATAAGGTTTTTCAACCCGTCGATCATCATGAGGTGGATTTTCCTGATGACATGGTTAAATTGGAATTAGACACAGAAAATAATTACCATCACTGGGCAGCTCAGTTGGCAAATGCAACACTGTCTGAAAATGGTGAATATGGATTACAAGCAGATCATCACTTTCTTAATTCAAGTGCAgtccaaaaattttataaaattcagtgtaCACTctgtaaaaaatggtttttgaaCAATGATTCTATGGTGACACATTTAAAAATGCATTGTAGTGGTAATACTTGTGAAGTTTGTCATCAGACTTTCATGGATAATGCAGGTCTACATGCACACATGTTAACTCATGTTGGTATGAGTCCAGTAGAATGTACAATATGTCAAAAAAGGTTTGCTTATAAATGGTGTTTACGCAATCACATGCAAACTCATATGACAAATAAGCAGTTTGAGTATGATAGTTTACAACAAGTTTTTCTGAAGAGATATAGTCAAAGCAATGATCATATGATTCGTGATGAAGAAAGGCCTTACACGTGTCACATTTGTCAAACATCATTTcgagaaaaaggaaatttaagTCGTCATATGATAATTCATAGCGGGGACAAACCACATAAATGTGATATTTGTTTTGCTTCTTTTCGAGAAAAAGCAAAACTAAACATACACATATCAATTCACACTGGtcataaacaatttaaatgtaCAATGTGTCATCGATCTTTTGCACAGAAAACTGCATTAAGTAATCATATGTTAGCACATAATGGTGAAAAACCTCATGCTTgtaatatttgtgaaaaaacatACAAACGAAAATCTGAATTAATAAGACATACAATGATTCATACTGGAGAACGACCATATGAATGTCAAGAGTGTTTAATGACTTTTAGAGAAAAAGCAAAACTGAACTCTCACATGTTGGTTCATACAGGTGAAAAGCCACATGAGTGCCACATATGTCATAAAACATGTGCTCGTAAATCAGATTTAAATAGTCATATGCTATCACATACTGGTGGCCAATATGACTGTAAAGtttgtgataaaattttcactcgTAAATCAGATTTAAATAGACATATTTTGGTTCATACTGGTGAGAAACCTTATGCTTGTGAATATTGCAATATGGCTTTTCGAGAAAAGACGAGACTCAATTCGCACATGGTTATTCATACAGGAGATAAAAGGCATATTTGTCATATTTGTCATAAGGGCTTCCGAGAAAAATCAATGTTGAGAAAGCATATGTTAAGTCATACTGGTGATAGACCTTATGAATGTTATTTATGTCAGAAAGCATTTGCGCAAAAAACAACTCTTAATAGTCACATTCTGACGCATACAACTGAAGAATCATCCTATGAATGCACTATATGTAGAAAAGTTTATAGAGACAGAATTGCATTAAAGAAACATCTTATAACACATGCAACAGGCAAAAATAATGAGTGTcctatatgtttaaaaaaatttactcacAAAATAGCATTGAGTAATCATATAACAACAAATCATTCTTTGTAA
Protein Sequence: MDSQHVMDENIVSIVLKEEPGEKYKSNYMEDICLGTFDKVFQPVDHHEVDFPDDMVKLELDTENNYHHWAAQLANATLSENGEYGLQADHHFLNSSAVQKFYKIQCTLCKKWFLNNDSMVTHLKMHCSGNTCEVCHQTFMDNAGLHAHMLTHVGMSPVECTICQKRFAYKWCLRNHMQTHMTNKQFEYDSLQQVFLKRYSQSNDHMIRDEERPYTCHICQTSFREKGNLSRHMIIHSGDKPHKCDICFASFREKAKLNIHISIHTGHKQFKCTMCHRSFAQKTALSNHMLAHNGEKPHACNICEKTYKRKSELIRHTMIHTGERPYECQECLMTFREKAKLNSHMLVHTGEKPHECHICHKTCARKSDLNSHMLSHTGGQYDCKVCDKIFTRKSDLNRHILVHTGEKPYACEYCNMAFREKTRLNSHMVIHTGDKRHICHICHKGFREKSMLRKHMLSHTGDRPYECYLCQKAFAQKTTLNSHILTHTTEESSYECTICRKVYRDRIALKKHLITHATGKNNECPICLKKFTHKIALSNHITTNHSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01469925;
90% Identity: iTF_01469074;
80% Identity: -