Tger023648.1
Basic Information
- Insect
- Torymus geranii
- Gene Symbol
- lola
- Assembly
- GCA_900474355.1
- Location
- UCWB01009896.1:2628-5096[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-05 0.022 15.3 0.0 1 40 205 244 205 249 0.78 2 4 5.1e-13 7e-10 39.3 0.0 3 39 257 292 255 299 0.88 3 4 5.4e-06 0.0075 16.8 0.0 6 34 312 339 307 345 0.88 4 4 1.3e-11 1.8e-08 34.8 0.0 5 37 371 403 369 409 0.93
Sequence Information
- Coding Sequence
- ATGGTCGAGAGGTCTAGCAGCAGTGCCGGCATCACGGACACTGAAGCAGGTACTCAGTACTGCTTCAAATGGAGCAATTACCAGAGCCACTTGGCAGAGGTGATGCGGGAGCTCCTCGACGAGGAGTCCATGGTCGACGTTACCATCGCGGCCGGCGGCGAACGTATACAGGCACACAAACTGGTACTTTGTGCCTGCAGCAGCCTATTTGCGGATCTATTGTGCCAGGCAAATGAAGAACACTCTACCATAATCCTGAGTGATATTGCAGCACAGgatataaaatcaattgtaGAATTTAGCTACAATGGAGAAGTTAGGATACCTGTGGAGAACATAAATAATCTGCTACATGCAGCACATTTTCTAAAGATATATGGTTTAATGGAAattgaagGTCTTGACGAAACTGAAGTTTCTAATGAAAAAGATATCTCTGCCGAAGAAAATTATCTTGATGAAACTGTAGAGTATGAAGATAATAAACAAGCATATGGAAAAGGTAATATTAATAAgaagaatgaagaaaataaaagaaagtactCAGATTCTGATTCAAATCTAAAATATACACATGTAAAACGAAGAAAGAGTGTATGTAAGAGAGATTACACTGATGATATGTTGAAGTCTGCTCTTGATGAGATTCGCAACGGAGGCACACTTCTTGAATCAGCTGCCAAACATCGTATACCTAGGTCTACTCTATACATGCGAGCAAAGGCTCTTGGTGTAACATTGAATCCATGTAGAAATGAATACACGCTTGATGATATGAAGCAAGCTATAGACGCTGTCttaagtGGATCTAGTTTACAGCAAGCTGCAGATATGCATGGCATACCAAAAACAGTTTTATGGAGGCGAATCCAAAAAGAAGGTTACAGATCTAATAGGcatgaaacaagaaaaaattatgcTCCTGACAGAAGAGAAGCTGCTATAAAAGCTTTACAGAGAGGAGAAGGCCTTACCAAAGTTGCAAatgaatataatATCCCGAAAACAACGCTATTCAGGGACAAAGCACGTCTTGTCGACCAGGGGAAATTGCCTTCAACATGTTGGAAACGACGTAAAACCGATGGAGAGGACCATAAACAAGTACGCCTAGAAGAAGCTGTGGCTGCCTGCAAAAACGGTAAAATGTCTCAAGGTACAGCTGCTGCTACTTATCACATACCTAAAACTACTATTTGGAGACGTCTTCACAAAGATAATAAATCTGATTCAGATTCGCCATTCAAAAAATCACCAAAGAAGAGGGATTCTATCGACACTGAAAATGTAGAAATAGTGAAAGCTGAAGATTTGAATGAGGGTGACTTTGAGGCATACTGTCCGGAGGATGGAGAAATGAACATAACATACATTGATGAAAGTAATATGTCAGATGATCCAGTAATTATTCTTGCAAGTGGAGATGTTGATGAATTAAATTTACCAAACAATAGGTCTTTGGTAGTAGTACAGCAGGAAGACAATGATGGTAATTTCATATCATGTGGATTGGAATTAGATGGTACATCCTTTGTAGAAAAAAGCTAA
- Protein Sequence
- MVERSSSSAGITDTEAGTQYCFKWSNYQSHLAEVMRELLDEESMVDVTIAAGGERIQAHKLVLCACSSLFADLLCQANEEHSTIILSDIAAQDIKSIVEFSYNGEVRIPVENINNLLHAAHFLKIYGLMEIEGLDETEVSNEKDISAEENYLDETVEYEDNKQAYGKGNINKKNEENKRKYSDSDSNLKYTHVKRRKSVCKRDYTDDMLKSALDEIRNGGTLLESAAKHRIPRSTLYMRAKALGVTLNPCRNEYTLDDMKQAIDAVLSGSSLQQAADMHGIPKTVLWRRIQKEGYRSNRHETRKNYAPDRREAAIKALQRGEGLTKVANEYNIPKTTLFRDKARLVDQGKLPSTCWKRRKTDGEDHKQVRLEEAVAACKNGKMSQGTAAATYHIPKTTIWRRLHKDNKSDSDSPFKKSPKKRDSIDTENVEIVKAEDLNEGDFEAYCPEDGEMNITYIDESNMSDDPVIILASGDVDELNLPNNRSLVVVQQEDNDGNFISCGLELDGTSFVEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01466091;
- 90% Identity
- iTF_01466091;
- 80% Identity
- iTF_01467257;