Tvir025374.1
Basic Information
- Insect
- Tortrix viridana
- Gene Symbol
- ZNF219
- Assembly
- GCA_963241965.1
- Location
- OY725199.1:7570172-7584698[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00072 0.058 14.5 0.5 1 23 300 322 300 322 0.98 2 12 0.23 18 6.7 4.7 1 23 329 351 329 351 0.96 3 12 0.63 50 5.3 1.4 1 23 355 377 355 377 0.96 4 12 0.0011 0.089 13.9 1.5 1 23 382 405 382 405 0.96 5 12 0.15 12 7.3 0.1 2 23 411 433 410 433 0.93 6 12 2 1.6e+02 3.7 0.1 1 19 441 459 441 461 0.91 7 12 0.00089 0.071 14.2 0.0 3 23 473 494 472 494 0.89 8 12 0.3 24 6.3 0.5 3 23 501 522 499 522 0.94 9 12 0.0067 0.53 11.5 0.0 2 21 555 574 554 575 0.94 10 12 8.8e-05 0.007 17.4 1.3 1 23 586 608 586 608 0.97 11 12 3.9e-06 0.00031 21.7 0.6 1 23 614 637 614 637 0.96 12 12 0.19 15 6.9 0.0 2 23 645 667 644 667 0.94
Sequence Information
- Coding Sequence
- ATGGTGCTCATTTCTGAGGACCTGAAGGCCTGTCGCGCTTGTCTGGCGACAAATACGAAGCTTTACAGTATTCCCGATGGTTTGGAAGACCAGTTTGTGGAGCTGATGGGGGTTGACTTTTCTGAAGATGATGGATTGCCACAGCACCTCTGCATGTACTGTCGGATGCAGCTGATGAGGTTTGCAGACATGAGGGTGCGGTGTACCCGGTCTCAAGAGGTTCTCAAGCAGCTGCTTAAGACACAGCCTTATCTATCTACTGATGACATCTCAACCATAGACAGAAACTTCTACAAACTAGCGTTAAATCTGGTACAACTAGGTGTCTATACCTTCAACTCTAACGAAAAGAAAACAATGAAAACTGACAATGTTAACACAAATACTGAAGCTGCACTTGATGAAGAAGAAATGTCAGAGATAAAGGCGGAAACAGATCCACTTGACGGTAACATATCTGACAGTGAAACATTCCGAGATCAAGAAATAGAAGTCACAGAACCAGAAGTCATAGAAGAAACGAAACCAAAAGGCTTATTCGTTCAAATAGATGGTTTAAATGGAGAAATAAAGATCAAAGACACCGCCGACATCAAAAAAGAAGAAATGAGAAAAGAATTCAAAAAACGTCAAGCTGAGAAAGCTGAGAAAAAGAAGAAGGAGAAGACCGCAAAGATATCTAATTTGATTCGTTTTGTGGCGGGGAAGAAGAGGAATGAGAAGCCGTTGACGAAATGGCAGATGCAGTTGCGTAGAGCGGAGAATAATTATTTGCCTAATTTTGATCATGCCGAGTTTGAAAGTAAACATGAGTGTAAACTAGAGATATTGACTATGGAGGAACAGCTGGCTGAGATAGAAGAGAGAAAGCAGAGtagtaattatttgaatttggatTATAAATGTGAGTTGTGCGGACGAGGTTTTGAGTTTGAGCAGCCATATAAGAATCATATGGCGAAACATGATCCGAGCGTCGGCAAGTTCGTCTGCGAGGTGTGCCATATATACTACCGCACGCAGTACCTGCGCCACCGCCACCTGGACTACCACAAGATGAAGTTCACCTGCAACATCTGCGCGTTCGTCACGCGAGCCAAACATTTGGCTCGGAACCACTACCTGATGCACACCGGCAAAGTATTCAAATGCAAGCAGTGCGACGCGACGTTCACAAAGAGCACGTCGTACCTGGGGCACGTGAGGCTGAACCATCCCTCGAAGGACTCCGTGTGCGAGATCTGTGGGGACTCCTTCGTCGGAGCCCTAGGGCTCCGGCATCACAAGGCCAAGGCGCACAAGGAGTTACCGAAACCCAAGTTCAAGTGTATATCGTGCGGCGTGCAGTTTGCTAGTTTGGACGTTTTGAACAAACATAAAGACGGACTAGTCAAGTGTGACGCCAGTAGCAGATCGTGCGTTGAATGCGGGGAGGTGTTCACCAGCGAAGAGTTGCTGAAGGCGCACGCGGAAGAGAGACATCTGCCCGTACACTACTGGTGCGAGGAGTGCGACCAAGCATTCTTGAGTCAAGCGTCTTACGACACTCATCACCAGAGGATTCATCTCAAGATCAAATGGCCGGCGTACGGACGCACCAGGGAAATGAACAAGGAGTATTATAAAAAGattaaagAGAGAGTCAGATTAAAAGCGCAAGTGGTCTGCGAAATATGCGGCGCCAAGCTAGCGTCCAACGGGGCGCTGGAGCGGCACCAACAGAGCCAGTGCAAGCGGGAGAGGAACAGCAAGTCGTACAAGTGTCCTTATTGCGAGAAAATGTGCGCCACCAGGCAGGGCCTGCAGTTGCACATAACTCTGCACACAGGCGAGAAGCCGTACAAGTGTCCGGAGTGTCCGCTCGAGTTCCGGCAGTCCGGGGCGCTCAAGCGACACCACAAGGGGGTGCACCTGGGCATCGACACGCGCGTGCCGTGCCCGGCCTGCGCGAAGCTGTTCTCCAGCGCGTCGTCGCGCCGGCTGCACGTGCGCGCCGTGCATCTGCGcctgccgccgcgcgcgcgccgcccgccgcacCCCGTTATCTCGTAG
- Protein Sequence
- MVLISEDLKACRACLATNTKLYSIPDGLEDQFVELMGVDFSEDDGLPQHLCMYCRMQLMRFADMRVRCTRSQEVLKQLLKTQPYLSTDDISTIDRNFYKLALNLVQLGVYTFNSNEKKTMKTDNVNTNTEAALDEEEMSEIKAETDPLDGNISDSETFRDQEIEVTEPEVIEETKPKGLFVQIDGLNGEIKIKDTADIKKEEMRKEFKKRQAEKAEKKKKEKTAKISNLIRFVAGKKRNEKPLTKWQMQLRRAENNYLPNFDHAEFESKHECKLEILTMEEQLAEIEERKQSSNYLNLDYKCELCGRGFEFEQPYKNHMAKHDPSVGKFVCEVCHIYYRTQYLRHRHLDYHKMKFTCNICAFVTRAKHLARNHYLMHTGKVFKCKQCDATFTKSTSYLGHVRLNHPSKDSVCEICGDSFVGALGLRHHKAKAHKELPKPKFKCISCGVQFASLDVLNKHKDGLVKCDASSRSCVECGEVFTSEELLKAHAEERHLPVHYWCEECDQAFLSQASYDTHHQRIHLKIKWPAYGRTREMNKEYYKKIKERVRLKAQVVCEICGAKLASNGALERHQQSQCKRERNSKSYKCPYCEKMCATRQGLQLHITLHTGEKPYKCPECPLEFRQSGALKRHHKGVHLGIDTRVPCPACAKLFSSASSRRLHVRAVHLRLPPRARRPPHPVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00009414;
- 90% Identity
- -
- 80% Identity
- -