Ahol039167.1
Basic Information
- Insect
- Acleris holmiana
- Gene Symbol
- -
- Assembly
- GCA_949316455.1
- Location
- OX438790.1:307419-329768[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0011 0.13 14.0 0.6 1 23 299 321 299 321 0.98 2 12 0.24 28 6.7 4.7 1 23 328 350 328 350 0.96 3 12 0.24 28 6.7 2.2 1 23 354 376 354 376 0.97 4 12 0.0012 0.14 13.9 1.5 1 23 381 404 381 404 0.96 5 12 1.1 1.3e+02 4.5 0.1 2 23 410 432 410 432 0.93 6 12 0.087 10 8.1 0.1 1 21 440 460 440 461 0.94 7 12 0.0046 0.54 12.1 0.1 3 22 472 491 471 493 0.88 8 12 0.17 20 7.1 0.8 3 23 500 521 498 521 0.94 9 12 0.042 4.9 9.0 0.0 2 21 554 573 553 574 0.94 10 12 4.4e-05 0.0052 18.4 1.5 1 23 585 607 585 607 0.97 11 12 2.1e-05 0.0024 19.5 0.6 1 23 613 636 613 636 0.96 12 12 0.0084 0.99 11.2 0.1 2 23 644 666 643 666 0.95
Sequence Information
- Coding Sequence
- ATGCGTAAGGCAATGACAGTGGAACTCGTATCTGAGGACCTGAAGGCGTGTCGCGCTTGTTTGGCGACTCATACTAGGCTCTACAGCATCTCCGATGGTTTGGAAGACAAATTCGTGGAGCTGATGGGAGTTGACTTTTCTGATGATGACGGTCTGCCGCAACACCTCTGCATGTACTGTCGCATGCAGCTGCTCAGGTTTGCCAACATGCGGATACGGTGTAACACATCTCGAGAGCTGCTCAAGCAACTGCTGCAGAAGCAGCCTTATcttTCTACGGATGACATCTCTACCATAGACAGAAACTTCTACAAACTAGCTCTTAACCTGGTACCACTCGGTGTCTACACCTTTAATTCAGACGAAAAGAGAACAATCAAATCTGTAGACATTAACGCAAAGCCTGATAGATTTGACGATGAAGAAATAACTGACATAAAGACTGAACTGGATCCACTTGATAGTTACGTATCTGAAAACGAAGCAATAGGATCCGTTGAACCGGAAGAAGCTAAAGAAAAACCAGAAGGCCTGTTTGTTGAGATAGACGGTTTGAACGGCCAGATCAAAATCAGAGACAATGCCGATGTCGAAAAGGAAAAGATGAGGGAAGAATTCAAAAAACGTCAAGCGGATAAAGttgagaagaagaagaaagagaAGAACGCAAAGATTACTAATTTGATTCGTTTTGTCGCTGGGAAGAAGAGAAATGAGAAACCGTTGACCAAGTGGCAGATGCAGTTACGTAGAGCTGATAACAATTACTTGCCTAATTTTGATCATGCCGAATTTGAAAGTAAACACGATTGTAAGTTAAAGATCTTGACATTTGAGGAACAGCTGGCCGAAATAGAGGAGAGGAAGCAAAGCAGTAACTATTTAAATTTGGATTATAAGTGTCAGCTGTGCGGGAGGGGCTTTGAGTTCGAGCAGCCTTATAGGAATCATATGGCAAAACATGACCCGAGCGTCGGTAAGTTCGTGTGCGAGGTGTGCCACATCTACTACCGCACGCAGTACCTGCGGCACCGGCACCTCGACTACCACAAGATGAAGTTCACCTGCAACATATGCTCCTTCGTCACTAGAGCCAAACATTTGGCGCGGAACCACTATCTCATGCACACCGGGAAAGTGTTCAAGTGCAAGCAGTGTGACGCCACTTTCACCAAGAGCACGTCGTACCTGGGGCACGTGCGGCTCAACCACCCGTCGCGCTCGGCCGTGTGCGCGCAGTGCGGGGACTCTTTCGTGGGCGCGCTCGGCCTGCGTCACCACAAGGCTAAGGCGCACAAGGAGTTGCCTAAGCCCAAGTTCAAGTGCGGCTCGTGCGGCGTGCAGTTTGCCAGCTCGGAGGTTTTGGACAAACATACAAACGGACAAGACAAGTGTGACGCCAGTAAGAGGTCGTGTGTCGAGTGCGGGGAAGTGTTCTCTAGCGACGAGCTGCTGAAGGCGCACGCCGACGAGAAGCACTTACCGACGCACTACTGGTGCGAGGAGTGCGACCAAACGTTCTTGAGTCAAGCATCGTACGACACGCATCATCAGAGGATTCATCTCAAGATCAAGTGGCCGGCGTACGGGCGCACGCGAGAGATGAATAAGGAGTATTATAAAAAGatCAAAGAGAGAATTCGATTAAAAGCACAAGTGGTCTGCGAGATCTGTGGCGCCAAGCTCGCGTCCAACGCGGCGCTAGACCGGCACCAGCAGAGCCAGTGCAAGCGAGAGAAGAACACCAAGTCGTACAAGTGTCCCTACTGCGAGAAGTCGTGTGCGACCCGGCAGGGGCTCCAGTTGCATATAACCCTGCACACGGGCGAGAAGCCGTACAAGTGCGGCGAGTGCCCGCTCGAGTTCCGCCAGTCGGGCGCGCTTAAGCGACACCACAAGGGGGTGCACCTGGGCATCGACACGCGCGTGTCGTGCGCGTTCTGCTCGAAGCCGTTCTCGACGGcgtcggcgcgcgcgctgcaCGTGCGCTCCGTGCACCTGCGCctgccgccgcgcgcgcgcagccggCCCGCGACAGGCACCTGA
- Protein Sequence
- MRKAMTVELVSEDLKACRACLATHTRLYSISDGLEDKFVELMGVDFSDDDGLPQHLCMYCRMQLLRFANMRIRCNTSRELLKQLLQKQPYLSTDDISTIDRNFYKLALNLVPLGVYTFNSDEKRTIKSVDINAKPDRFDDEEITDIKTELDPLDSYVSENEAIGSVEPEEAKEKPEGLFVEIDGLNGQIKIRDNADVEKEKMREEFKKRQADKVEKKKKEKNAKITNLIRFVAGKKRNEKPLTKWQMQLRRADNNYLPNFDHAEFESKHDCKLKILTFEEQLAEIEERKQSSNYLNLDYKCQLCGRGFEFEQPYRNHMAKHDPSVGKFVCEVCHIYYRTQYLRHRHLDYHKMKFTCNICSFVTRAKHLARNHYLMHTGKVFKCKQCDATFTKSTSYLGHVRLNHPSRSAVCAQCGDSFVGALGLRHHKAKAHKELPKPKFKCGSCGVQFASSEVLDKHTNGQDKCDASKRSCVECGEVFSSDELLKAHADEKHLPTHYWCEECDQTFLSQASYDTHHQRIHLKIKWPAYGRTREMNKEYYKKIKERIRLKAQVVCEICGAKLASNAALDRHQQSQCKREKNTKSYKCPYCEKSCATRQGLQLHITLHTGEKPYKCGECPLEFRQSGALKRHHKGVHLGIDTRVSCAFCSKPFSTASARALHVRSVHLRLPPRARSRPATGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01464460;
- 90% Identity
- -
- 80% Identity
- -