Tvir025847.1
Basic Information
- Insect
- Tortrix viridana
- Gene Symbol
- -
- Assembly
- GCA_963241965.1
- Location
- OY725201.1:639973-647455[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5.4e-05 0.0044 18.1 0.1 3 23 93 113 91 113 0.97 2 20 0.0002 0.016 16.3 2.4 3 23 121 141 120 141 0.97 3 20 9e-07 7.2e-05 23.7 0.9 1 23 147 169 147 169 0.97 4 20 0.016 1.3 10.3 4.0 1 23 175 197 175 197 0.98 5 20 2.9e-05 0.0023 18.9 2.7 2 23 220 241 219 241 0.97 6 20 1.1e-06 8.8e-05 23.4 0.4 1 23 247 269 247 269 0.98 7 20 2.9e-05 0.0023 18.9 0.7 2 23 275 296 275 296 0.97 8 20 2.3e-06 0.00018 22.4 0.8 3 23 304 324 302 324 0.98 9 20 6.8e-05 0.0054 17.8 2.3 1 23 330 353 330 353 0.98 10 20 0.0011 0.09 13.9 1.1 2 23 506 527 505 527 0.97 11 20 4.6e-05 0.0037 18.3 1.5 3 23 535 555 534 555 0.97 12 20 5.9e-06 0.00047 21.1 1.3 1 23 561 583 561 583 0.98 13 20 7.8e-06 0.00062 20.7 1.8 1 23 589 611 589 611 0.99 14 20 6.9e-05 0.0055 17.7 1.1 1 23 617 639 617 639 0.97 15 20 9.2e-06 0.00073 20.5 4.5 1 23 645 667 645 667 0.98 16 20 1.1e-05 0.00091 20.2 2.0 1 23 673 695 673 695 0.95 17 20 1.2e-05 0.00093 20.2 4.9 1 23 701 723 701 723 0.98 18 20 0.0013 0.11 13.7 0.2 1 23 740 762 740 762 0.97 19 20 1.4e-05 0.0011 20.0 0.8 1 23 768 790 768 790 0.98 20 20 0.00017 0.013 16.5 6.2 1 23 796 818 796 818 0.98
Sequence Information
- Coding Sequence
- ATGTCTTGCCAGTACATGTTAGTTAAATGTGAGCCAGAATGCTCGAAATGGGCCGCTTTGGGTGTCTCGAGCACACAGAACGAATCTGGACACACTGCTGAGGAGTCAGACCCATCGTCACATAGTAAAGTTAAGAGAGAATCGACGGACATAGTAAGCAAAGTTGACAACAAGATTGCGACTCCTGAAACTGCTCAAAATGAAGGAGTTAAAGATGAAAATCAGTTGGGTAATCCGGTACAGGCAGGCACTGGCGGCTCTCACCGCAGATGGGCGTGCCCCATATGCGGCAAGACGTCGTGGTCGCCGGCGCACCTGCGCGTGCACATGCGCGTGCACACGGGCGAGCGGCCCGCGTGCTGCCACGCGTGCGGCAAGCGGTTCCCCACGGACGGCAACCTGGCGCGCCACCTGCTCACCCACACAGGAGAGAGACCTTTCGCCTGCGAGTATTGTAGCAAGAGattcaCCCAAAAGTCAGTGCTAATTAAACACATTAGAATCCACACCGGAGAAACGCCTTTCTCTTGCAATATATGCCTCAAACAGTTCTCCAGAAGCTTCACTCTTGCATGTCACCGTAGAGTACACGGAGATAAATATGTGAAGGAAGAAAAATCACCCGAAGCTAAACCTCCCGCGGTCGCTGAGGCTTGGACCTGCGATGTTTGTAATAAGACGTTTAAGAACAAATCATACAGGCACGCACATATGCAAATACATGCACGCGAAAACCCATTTACATGTAAAGTATGTGAGAGACAATTCTCCACGGCGGGGAATTTGGAGAAGCATTTGAATGTGCATATGGAGAAGATGCGGACGTGTACTGAATGTATGAAAGAGTTTAAGACCCGTGCAAATTTGATTAGGCATATGCTAGTTCATACAGGTGAAAGACCTTTTGGATGTAATTATTGTGGCAAAAGGTTTACGCAGAAAAGCGTGCTAATAAAGCATGAGCGTATACACACTGGGGAGATGCCGTATTCTTGTGAAATATGTTTCAAGAAGTTCTCTAGAAGCTTTACTTTAGATAATCATTTGAAACGAGTGCATAAAAAAGGAGATAAAGAAAAAACAAGAGATGTAGATAGTGTGAGAGTACAGAGTGATATGAAGCCGTATTGGTGTGACAAATGCGATAAATGGTATAATAGTAAAGATTTTTATGAACATGAGTGTGTTCAAGAAGATAATTTGAACATTTTCAACGAAAATGATTTTGATAATGATGTTAGTGAAAGTGAACCTTTTGATGTAAATAAAGAAATAGATGAATCATACATTGCCAGAGAAGGTCCAGGTGTTATAAACAGAATAGAAGTAATTGATCAAATTACAGATGAAAGAGCTAGTGAAATCAAAGATGCAACGAGAAATATCGAAGATATAACAGAGCTTTTAACATACGAAGACAAATACACGGTGTCAAAcgttgttgatgatgatgacgctGATAACTGTTTAATagaaaaagaaatgaaaaagcACAAATCAAAACCGAAAAGCTGGTCATGTAAAATTTGTAAAGAGAAATTCGAAATTAAATCTTTATACCAAGCACATAAAAAAACCCACGAAAATGAAAAGCCAGGATTCTGCAAGATCTGTAACAAGTATTTCAATACCAATGGCAATTTGCTTCGGCATAAACTTATACACACGGGAGAGAAACCTTTCGTTTGCGAATTTTGTAATAAACGATTCACACAAAAAAGTGTTCTAATCAAACATGAACGAATCCATACTGGAGAAATGCCCTATAAATGTGATGTTTGCGACAAAAAATTCGCGCGTAGCTTCACCCTGTTGAACCACAAGAAAGTTCACAGCGTTGTTAAGCCGTTTGCCTGTAAATTCTGCGAGAAATCTTTCACACAAAGGAGTGCTATGATGATACATGAAAGGAATCACACAGGCGAGAAACCCTTTTCGTGCACAATTTGTAATAAACACTTCACTAGTAATAGCACACTGAAGAGCCATAGCAGGATACACACGGGAAACAAACCTTTCCTGTGCGATGTTTGTTACAAGCAGTTTACTACAAGCAGCAACTTCTACAGCCATATGAGGATCCACGCGGGCGACAAACGGCACACTTGCGACGTCTGCCAAAAGAAATTCTACACAAATAGTAGTTTGACAAAGCACAAACGAGTACACGCACATAAGGTGAGCAAGCCGGAGCCGCCCCCGGACGCGAGCAAGCCGTTCCGCTGCGGCGCCTGCGCGCGGCGCTTCGCCAGCGCCTACCTGCTGCGTCGCCATGCGCGCGCGCACTCCGGCGAGCGCCCGTACGCCTGCTCGCAGTGCGACAGACGGTTCACGCTGAGCGGAGACCTGGTCCGGCACCGGCGCTCCCACTCGGGCGAGAAGCGCTACTCGTGCGGCGAGTGCCGCAAGCAGTTCACGCGGCGCCACTCGCTGCTCCACCACCGGCGGGTGCACGCGGAGCCGCAGGCGCCGGGAGATTAA
- Protein Sequence
- MSCQYMLVKCEPECSKWAALGVSSTQNESGHTAEESDPSSHSKVKRESTDIVSKVDNKIATPETAQNEGVKDENQLGNPVQAGTGGSHRRWACPICGKTSWSPAHLRVHMRVHTGERPACCHACGKRFPTDGNLARHLLTHTGERPFACEYCSKRFTQKSVLIKHIRIHTGETPFSCNICLKQFSRSFTLACHRRVHGDKYVKEEKSPEAKPPAVAEAWTCDVCNKTFKNKSYRHAHMQIHARENPFTCKVCERQFSTAGNLEKHLNVHMEKMRTCTECMKEFKTRANLIRHMLVHTGERPFGCNYCGKRFTQKSVLIKHERIHTGEMPYSCEICFKKFSRSFTLDNHLKRVHKKGDKEKTRDVDSVRVQSDMKPYWCDKCDKWYNSKDFYEHECVQEDNLNIFNENDFDNDVSESEPFDVNKEIDESYIAREGPGVINRIEVIDQITDERASEIKDATRNIEDITELLTYEDKYTVSNVVDDDDADNCLIEKEMKKHKSKPKSWSCKICKEKFEIKSLYQAHKKTHENEKPGFCKICNKYFNTNGNLLRHKLIHTGEKPFVCEFCNKRFTQKSVLIKHERIHTGEMPYKCDVCDKKFARSFTLLNHKKVHSVVKPFACKFCEKSFTQRSAMMIHERNHTGEKPFSCTICNKHFTSNSTLKSHSRIHTGNKPFLCDVCYKQFTTSSNFYSHMRIHAGDKRHTCDVCQKKFYTNSSLTKHKRVHAHKVSKPEPPPDASKPFRCGACARRFASAYLLRRHARAHSGERPYACSQCDRRFTLSGDLVRHRRSHSGEKRYSCGECRKQFTRRHSLLHHRRVHAEPQAPGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00010399;
- 90% Identity
- -
- 80% Identity
- -