Alat036646.1
Basic Information
- Insect
- Acleris laterana
- Gene Symbol
- -
- Assembly
- GCA_963966035.1
- Location
- OZ014467.1:8280723-8290819[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00039 0.039 15.5 0.2 3 23 91 111 89 111 0.97 2 21 9.5e-05 0.0095 17.4 3.4 3 23 119 139 118 139 0.97 3 21 7.6e-07 7.7e-05 24.0 0.9 1 23 145 167 145 167 0.98 4 21 0.018 1.8 10.3 4.0 1 23 173 195 173 195 0.98 5 21 0.00017 0.017 16.6 2.7 2 23 218 239 217 239 0.97 6 21 1.1e-05 0.0011 20.5 1.1 2 23 246 267 245 267 0.97 7 21 0.00023 0.023 16.2 1.9 2 23 273 294 273 294 0.97 8 21 2.8e-06 0.00028 22.3 1.0 3 23 302 322 300 322 0.98 9 21 7.8e-05 0.0078 17.7 2.3 1 23 328 351 328 351 0.98 10 21 5.8 5.8e+02 2.4 0.3 3 21 376 394 375 395 0.92 11 21 0.0022 0.22 13.2 1.0 2 23 515 536 514 536 0.97 12 21 1.8e-05 0.0018 19.7 0.8 3 23 544 564 543 564 0.97 13 21 3.4e-06 0.00034 22.0 1.7 1 23 570 592 570 592 0.98 14 21 5e-06 0.0005 21.5 1.8 1 23 598 620 598 620 0.99 15 21 4.1e-05 0.0041 18.6 1.7 1 23 626 648 626 648 0.98 16 21 1.2e-06 0.00012 23.4 2.9 1 23 654 676 654 676 0.98 17 21 1.3e-05 0.0013 20.2 2.0 1 23 682 704 682 704 0.95 18 21 1.3e-05 0.0013 20.1 4.9 1 23 710 732 710 732 0.98 19 21 0.0017 0.17 13.5 0.2 1 23 749 771 749 771 0.97 20 21 3e-06 0.0003 22.2 0.9 1 23 777 799 777 799 0.98 21 21 0.00023 0.023 16.2 3.2 1 23 805 827 805 827 0.97
Sequence Information
- Coding Sequence
- ATGTCTTGTGATTATTTGCTAGCTAAATCTGACTCGGAATGCTCGAGATGGCCAGCCCCGGGTGTCTTAAGCACGCAGAATGAAGCAGAAAATAGTGCTGACGCAGACCCATCGTCAAATAGAAAATTTAAGAGAGAATCTACCGATGTAGTAAGCATCATTGACAACAAAATTGCGTCTGCCGAAACTGTTCCAAATGGAGTTAAAGAAGACAGTGAACTGGGCTACCCAGTGCAGGCCGGCACTGATGGCTCCCACCGAAGATGGGCATGCCGCATATGCGGCAAGACCTCCTGGTCCCCGGCGCACCTGCGCGTGCATATGCGCGTGCACACGGGCGAGCGGCCTGCGTGCTGCCACGCGTGCGGCAAGCAGTTCCGCACGGAGGGCAACCTGGCGCGACACCTTCTCACCCACACTGGAGAGAGGCCTTACGCCTGCGAGTATTGTAGCAAACGATTCACCCAAAAGTCAGTTCTAATAAAACACATTCGAATCCACACCGGAGAAACACCTTTCTCCTGCAATATATGCCTAAAACAGTTCTCCAGAAGCTTCACTCTTGCATGTCACCGTAGAGTACACGGGGACAAATACGTGAAGGAAGATAAACAACCCGAAACTAAACCCCCGGCGGTTCCTGAACCTTGGACTTGCGAAGTTTGTAACAAACAGTTCAAAAACAAATCCTACAAGCACGCGCATATGCAGATACATACACGAGATAAAACATTAACGTGTAAATTATGTGAGAAACAATTTTTCACCGCAGTGAATTTGAAGAAGCATATGAATGTGCACTCAGAGAAGATACGGACGTGCAGTGAATGTATGAAAGAGTTTAAGAGCCATGCTAATTTGATGAGGCATATGTTAGTTCATACTGGGGAAAGACCTTTTGGATGTAAGTATTGTGGGAAAAGGTTTACGCAGAAAAGTGTCCTGATAAAACACGAGCGTATCCACACGGGGGAGATGCCGTATTCCTGTGAAATATGCTTTAAGAAGTTCTCTAGGAGTTTCACTTTGGATAATCATTTGAAACGAGTGCATAAGAAAATGGAGAAGGAAACAACAAAAGACGTTGAGAGTGTAAGAGTACAGAAAGATTTAAAGCCGTTTTGGTGTGATAATTGTGATAAGTGGTATAGTAGTAGCATTGATTTTTATGAACATGTATGTGTTCAAGATGATAGTTTGGACATTTGCAATGCAGATGTTTTTGATAATGATATAAGTGACAGTGAGCATTTTGatataaatgtaaatttacACGAATGTTTGATAGATAGGGAAGATCATGGTGTTATAAATGAAAGCTATGTAGAAGATATGGTACTTAGAGAGATAGAGGTAATAGAACCAATTACAGATGAAATAGATAAAACAATTAATGAGCCAATGAGAAACATTGAAGATACAACAGAACTTTTGACATATGAAGATAAATACACGGCATCAGACGTTGTTGACAACGACGGCGTTGATAACGGTTTAATAGAAAAGAAAACGAAAAAGCACAAATCAAAAACGAAAAACTGGTCGTGTAAAATTTGTAAAGAGAAATTCGAAATAAAATCTTTATACCAAGCACATAAAAAGATGCACGAAAATGAGAAACCAGGATTCTGTGAGATCTGTAATAAGCAATTTAATACAAATGGCAATTTGATTCGCCACAAGCTTATACACACGGGCGAGAAACCTTTCGTCTGCGAATTTTGTAATAAACGGTTCTCGCAAAAAAACGTGCTAACCAAACACATCCGCATCCATACTGGAGAAATGCCTTATAAATGCGACATTTGCGACAAAAAATTCGCGCGTAGCTTCACTCTGTTGAACCACAAGAAAGTTCACAGCGCTGTTAAACCATTTTCCTGTAAATTTTGCGAGAAATCTTTTACGCAAAGGAATGCTTTGATGATTCATGAAAGAAATCATACGGGCGAGAGGCCTTTCTCGTGCAAAATTTGTAATAAACAGTTCACAAGCAACAGCACGCTGAAAAGTCATACTCGGATTCACACGGGAAACAAACCTTTTCTCTGCGATGTTTGTTACAAACAGTTTACTACGAGCAGCAACTTCTACAGCCATATGCGGATCCACGCTGGCGACAAGCGGCATACTTGCGACGTCTGTCAAAAGAAATTTTACACTAATAGCAGTTTGACGAAGCACAAACGGGTCCACACACAAAAGGTGAGCAGGCCGGAGCCCCCCCCGGACGCGAGCAAGCCGTTCCGCTGCGGCGCGTGCGCGCGGCGCTTCGCGAGCGCCTACATGCTGCGCCGCCACGCGCGCGCGCACTCCGGCGAGCGCCCCTACGCCTGCTCGCAGTGTGACAAGCGTTTCACGTTGAGCGGCGACCTGGTCCGCCACCGGCGCACCCACTCCGGCGAGAAGCGCTACGCATGCGCGGTGTGCCGCAAGCAGTTCACGCGGCGCCACTCGCTGCTCAACCACCGGCGGCTGCACGACGACCCGCCGGGCGGGACCCCCAGCGCGATACAACTGGGATATCCCAACTGTGACCAGTGA
- Protein Sequence
- MSCDYLLAKSDSECSRWPAPGVLSTQNEAENSADADPSSNRKFKRESTDVVSIIDNKIASAETVPNGVKEDSELGYPVQAGTDGSHRRWACRICGKTSWSPAHLRVHMRVHTGERPACCHACGKQFRTEGNLARHLLTHTGERPYACEYCSKRFTQKSVLIKHIRIHTGETPFSCNICLKQFSRSFTLACHRRVHGDKYVKEDKQPETKPPAVPEPWTCEVCNKQFKNKSYKHAHMQIHTRDKTLTCKLCEKQFFTAVNLKKHMNVHSEKIRTCSECMKEFKSHANLMRHMLVHTGERPFGCKYCGKRFTQKSVLIKHERIHTGEMPYSCEICFKKFSRSFTLDNHLKRVHKKMEKETTKDVESVRVQKDLKPFWCDNCDKWYSSSIDFYEHVCVQDDSLDICNADVFDNDISDSEHFDINVNLHECLIDREDHGVINESYVEDMVLREIEVIEPITDEIDKTINEPMRNIEDTTELLTYEDKYTASDVVDNDGVDNGLIEKKTKKHKSKTKNWSCKICKEKFEIKSLYQAHKKMHENEKPGFCEICNKQFNTNGNLIRHKLIHTGEKPFVCEFCNKRFSQKNVLTKHIRIHTGEMPYKCDICDKKFARSFTLLNHKKVHSAVKPFSCKFCEKSFTQRNALMIHERNHTGERPFSCKICNKQFTSNSTLKSHTRIHTGNKPFLCDVCYKQFTTSSNFYSHMRIHAGDKRHTCDVCQKKFYTNSSLTKHKRVHTQKVSRPEPPPDASKPFRCGACARRFASAYMLRRHARAHSGERPYACSQCDKRFTLSGDLVRHRRTHSGEKRYACAVCRKQFTRRHSLLNHRRLHDDPPGGTPSAIQLGYPNCDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01464361;
- 90% Identity
- -
- 80% Identity
- -