Tvir002142.1
Basic Information
- Insect
- Tortrix viridana
- Gene Symbol
- Paxbp1
- Assembly
- GCA_963241965.1
- Location
- OY725171.1:29397116-29411412[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.0016 24 5.1 0.0 174 206 106 138 96 140 0.83 2 3 1.1e-09 1.5e-05 25.4 0.3 4 50 129 175 126 203 0.87 3 3 1.1e-06 0.016 15.4 0.0 126 190 237 301 228 306 0.81
Sequence Information
- Coding Sequence
- ATGCCGCAGCTGGAGGCGCTGGAAGCGCGCGCGCTGGCGCTGCACCGGCGGCGCTGCGCCTTCCTggcggcgcgccgccgcgccgatGTGCAGGACCAGGCGCTCGACATgctcgccgcgctcgccgcgccCGGTCGCGGCGGGGCGAAGGGTCCGGAGTCGGAGGAGAAGGTACGGCGCGCCGCGGAGCGCGAGGGGCGGCGGCGCGTGCGTCGGCTGCGGCGCGAGGcggcagcggcgcgcgcgcaccgcgaCGGCGACTCCAGTGACGATGACCTGCCGCCTGCCGAGCTGCACCACTACACGCACGAAAAAGAGGCGAtccgcgcggcggcggcggcattGTTCGCGGACGCGCTGCCGGCGTGGCGCAGCGCGCGCGGCGTGTGTGCGCGGCTAGCGCGCTGGCGGCGCCGCGACCCGGTGCTCTACGCCGACGCCTACGTCGCCGACAGTCTGCCCAAGCTGCTCGCGCCATACGTGCGCCACCAGCTGATCCTGTGGAACCCGCTGGCGGACGAAGATAACGAGGACTACGAGCGCATGGACTGGTACAGCTGTCTTATGATGTACGGCGTCCGCGAGGAAAGGCTCTCATCCGAGTCGTCGGGGTCCGGCGGGGAAGCTGACCCGGGGGCCACGGGCGGTGCAGGGGGCGCGGCACTCACCGAGGCGGGCGTGTGCGCTGACCCCGACCTCATGCTCGTGCCCGCCATCCTGCGGGGCGTCGTGCTGCCCAAGCTGACAGAGGTGGTAGAGAGCGCGTGGGACCCGGTGTGCGTGCGCGCCGGCGTGCGCCTGCGGCAGCTAGTGCTGCGCGCCTGCGCGCTGCCCGGCGGCACCAtggccgccgcgcgcctcgccgccgccgcgcgcgcgcgcctcaAGCTGGCGCTCGCCGCCGACGTCTTTCTGCCGCCGCTGCCTACCAACCAGTTCCTCGCCTTCACGCTGAACTCTAATCTCAGCTGGAAGTGCCATGTCGACAAACTGTGTGATAGATTAGGTGGTGCAGTCTTAGCGCTGCGCAAGCTGAAAGTGCTTGTTGCGAATGATGCATTAAAGCAAGTGTACTTCACATTTTCACTCCCTGATGTCGTATGGCACGCTCCTATGGGGAAACTCCACGGACGCTAA
- Protein Sequence
- MPQLEALEARALALHRRRCAFLAARRRADVQDQALDMLAALAAPGRGGAKGPESEEKVRRAAEREGRRRVRRLRREAAAARAHRDGDSSDDDLPPAELHHYTHEKEAIRAAAAALFADALPAWRSARGVCARLARWRRRDPVLYADAYVADSLPKLLAPYVRHQLILWNPLADEDNEDYERMDWYSCLMMYGVREERLSSESSGSGGEADPGATGGAGGAALTEAGVCADPDLMLVPAILRGVVLPKLTEVVESAWDPVCVRAGVRLRQLVLRACALPGGTMAAARLAAAARARLKLALAADVFLPPLPTNQFLAFTLNSNLSWKCHVDKLCDRLGGAVLALRKLKVLVANDALKQVYFTFSLPDVVWHAPMGKLHGR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -