Tvir012547.1
Basic Information
- Insect
- Tortrix viridana
- Gene Symbol
- -
- Assembly
- GCA_963241965.1
- Location
- OY725180.1:728904-735973[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.2e-12 8.5e-09 35.6 0.0 4 38 230 265 227 270 0.89 2 4 1.2e-12 1.6e-09 37.9 0.3 2 39 282 319 281 322 0.93 3 4 7.9e-15 1.1e-11 44.9 0.0 2 45 337 381 336 381 0.96 4 4 1.9e-18 2.6e-15 56.5 0.0 1 43 388 431 388 433 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCGCGGTCTGTCGCGGGTCAAGTGTGAGCCGGCCTCGGAAGACAGCAACTCTCAGTTCACGCACAACTTCTCTAatcagATACGGTCGGAGCTCCGTCCGGTGAAACTCGAGTCAGGGATCGCCGACAATGCGTCTGCGCACATCCTGCGCCACCTGCAGGGCGGGGAGGGTCTGGAGGAGTTGGCGCCGCCGCCGACGGGCCCCACGGCGACGCCGGTGTGCGTCAAGCAGGAGCCCGCCGAGCCCGCCGTGTCCCTCGAGACCCTGGAGCCTGCGAACCATGACACCCTGGAGCCCGCCGAGCCCGCCGTGTCCCTCGAGACCCTGGAGCCTGCGAACCATGACACCCTGGTAAATTTAAGCCTTCCTTGTATTGTGTTGGAGCTGGCAGGCCGGGCAGGGTCAACTGGCGACGCCGGCGTGCGTCAAGCAGGAGCCCGCCGAGCCCGCCGTGTCCCTCGAGACCCTGCGAACCATGACACCCTGGGTTTTACACTGATCGACCGACACAAGACGCTACCAGGCGCCAGCGACGCTGACTCCATGGAGTTCATGCCACTCCTCGCTGTCAAAGACGAACCCCTGTCGGAAGGAGAGCAACAGCATCTGAGCGAATCAGACACGAGTGACTCGACGCCGCCGGAACTCACGCGCAGCCCCAAAAGCTGGACACAGCGCGACATGGCGCTTGCACTCGACGCACTGCGGAACCACAACATGAGCCTCACTAAGGCGTCGGCTCGGTACGGCATCCCGTCCACGACGCTGTGGCAGCGCGCGCACCGCGCCGGCATCGACACGCCGAAGAAGGAGGGCGCCTCCAAGTCCTGGGGCGAGGCCGACctgcgcgccgcgctcgccgcgctcCGCGAGGGTGCCATCTCCGCCAACAAGGCCAGCAAGGCCTACGGCATTCCTAGCAGCACACTGTATAAGATTGCGCGGCGTGAGGGCATCCGGCTGGCGGCGCCGTTCAATGCGGCGCCCACCGCCTGGCGCCGCGCCGACCTGGAGCGGGCGCTCGCCTCCATCCGCTGCGGAGCTTGTTCTGTGCAACGAGCGGCCTCACAATTCGGCATTCCTACAGGCACTTTATATGGAAGATGTAAACGAGAGGGCATTGAGCTGTCTCGGTCTAACCCCACTCCTTGGTCCGAAGACGCCATGGGCGAAGCACTGGAAGCGGTTAGaGTTGGCCAGATGTCGATTAACCAAGCAGCAATCCATTACAACCTGCCTTACTCGTCCCTCTACGGACGGTTCAAGAGATGCAAATATCAAAGTCCTCAAGGAATGCCCCAACAAACCATGACAGAAAATATGGAAATGGAGCCCCAATCACAATCACAAGAAATATACTACCATAATCAAAACGTGCCCGTAAGCCATACAATGCATCATCCGGAACAAGACCTTCAGAATCCGTATCTTCATCAGACTTATGCTATAAGTGAACCTGGGTTTGATGGGATGCATGGTAATGTGTTTACGGAGCAGAGTTATGGGATGTATTACCAAGGGTGCAGCAGTATCGCCACCAGCTGA
- Protein Sequence
- MPGRGLSRVKCEPASEDSNSQFTHNFSNQIRSELRPVKLESGIADNASAHILRHLQGGEGLEELAPPPTGPTATPVCVKQEPAEPAVSLETLEPANHDTLEPAEPAVSLETLEPANHDTLVNLSLPCIVLELAGRAGSTGDAGVRQAGARRARRVPRDPANHDTLGFTLIDRHKTLPGASDADSMEFMPLLAVKDEPLSEGEQQHLSESDTSDSTPPELTRSPKSWTQRDMALALDALRNHNMSLTKASARYGIPSTTLWQRAHRAGIDTPKKEGASKSWGEADLRAALAALREGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRCGACSVQRAASQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQSPQGMPQQTMTENMEMEPQSQSQEIYYHNQNVPVSHTMHHPEQDLQNPYLHQTYAISEPGFDGMHGNVFTEQSYGMYYQGCSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00009921;
- 90% Identity
- -
- 80% Identity
- -