Alat021899.1
Basic Information
- Insect
- Acleris laterana
- Gene Symbol
- -
- Assembly
- GCA_963966035.1
- Location
- OZ014450.1:17301509-17309235[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.4e-11 2.3e-08 34.7 0.0 4 39 168 204 165 208 0.90 2 4 1e-11 5.3e-09 36.8 0.2 2 39 220 257 219 260 0.93 3 4 2.4e-14 1.3e-11 45.2 0.0 2 45 275 319 274 319 0.96 4 4 6e-18 3.1e-15 56.7 0.0 1 43 326 369 326 371 0.95
Sequence Information
- Coding Sequence
- atGCACGGTCGCGGTCTGTCGCTGGTCAAGTGTGAGCCGGCCTCGGAAGAAGATAGCAACTCGCAGTTCACGCACAACTACTTTTCTAATCAGATACCGTCACTGGAGCTCCGTCCGGTGAAACTCGAGCCGGGCATCGACGACAATGCATCCGTGCACATCCTGCGCCACCTGCAGGGCGGGGAAGGTCTGGAGGAGCTGGCGCCGCCGCCGACGGGCCCCACGGCGACGCCGGTGTGCATCAAGCAGGAGCCCGCCGAGCCCGCCGTGTCCCTGGAGACCCTCGAGCCCGCGAACCATGACACCCTGGGTTCTACACTGATCGACCGGCACAAGACGCTGCCAGGCGCCAACGACGCTGACTCCATGGACTTCATGCCGCTTCTTGCTGTCAAAGACGAACCCCTGTCGGAAGGTGaGCAACAGCACCTGAGCGGATCTGACACGAGCGACTCGACGCCGCCGGAACTCGCACGCAGCCCCAAGAGCTGGACGCAGCGTGACATGGCGCTGGCGCTCGACGCGCTGCGGAACCACAACATGAGCCTCACTAAGGCGTCGGCGACGTACGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTTGGCATCGACACGCCGAAGAAGGAGGGCGCCTCCAAGTCCTGGGGGGAGGCCGACCTGCGCGCCGCGCTCACTGCGCTGCGTGAGGGTGCCATCTCCGCCAACAAGGCCAGTAAGGCCTACGGCATCCCTAGCAGCACACTGTACAAGATCGCGCGGCGCGAGGGCATCCGGCTCGCGGCGCCGTTCAACGCCGCGCCCACCGCCTGGCGCCGCGCAGACCTGGAGCGAGCCCTCGCTTCTATACGTTGCGGGGCTTGTTCAGTGCAACGAGCTGCTTCACAGTTTGGCATCCCTACAGGCACTTTATATGGACGATGTAAACGAGAGGGTATTGAGCTATCCCGATCTAACCCCACTCCTTGGTCCGAAGACGCCATGGGGGAAGCGCTGGAAGCAGTTAGAGTCGGCCAGATGTCGATAAACCAAGCAGCAATTCATTACAACCTACCCTACTCGTCACTTTACGGACGGTTTAAGAGATGCAAATATCAAAGTCCTCAAGGAATACCGCAACAAACCATGTCAGAAAATATGGAAATGGAACCGCAATCACAATCACAAGAGTTGTTCTACCATAATCAAAACGTGCCCGTGAGTCATACCATGCACCATCCTGAACACGACGTCCAGAATCCGTATGTTCACCAGACTTATGCCATAAGTGATCCCGGGTTTGATGGGATGCATGGTAATATGTTCGCGGAGCAGAATTATGGGATGTATTACCAGGGGTGCAGCAGTATCGCTACCAGTTGA
- Protein Sequence
- MHGRGLSLVKCEPASEEDSNSQFTHNYFSNQIPSLELRPVKLEPGIDDNASVHILRHLQGGEGLEELAPPPTGPTATPVCIKQEPAEPAVSLETLEPANHDTLGSTLIDRHKTLPGANDADSMDFMPLLAVKDEPLSEGEQQHLSGSDTSDSTPPELARSPKSWTQRDMALALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWGEADLRAALTALREGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRCGACSVQRAASQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQSPQGIPQQTMSENMEMEPQSQSQELFYHNQNVPVSHTMHHPEHDVQNPYVHQTYAISDPGFDGMHGNMFAEQNYGMYYQGCSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01464085;
- 90% Identity
- -
- 80% Identity
- -