Talt008223.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tortricodes alternella
Gene Symbol
-
Assembly
GCA_947859335.1
Location
OX401974.1:12907643-12912235[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.19 12 6.9 3.4 2 22 197 217 196 217 0.95
2 16 7.8 5e+02 1.8 1.4 1 23 317 339 317 339 0.79
3 16 0.36 23 6.0 0.5 2 23 475 496 474 496 0.96
4 16 0.024 1.5 9.7 0.9 2 23 575 596 574 596 0.96
5 16 0.084 5.3 8.0 2.7 1 23 604 626 604 626 0.97
6 16 0.084 5.4 8.0 3.6 1 23 661 683 661 683 0.95
7 16 0.00044 0.028 15.2 5.4 1 23 691 713 691 713 0.99
8 16 0.095 6 7.8 1.9 1 23 797 819 797 819 0.99
9 16 2.9 1.9e+02 3.2 2.3 1 19 874 892 874 896 0.91
10 16 0.082 5.3 8.0 1.2 2 20 903 921 902 924 0.94
11 16 0.25 16 6.5 0.6 1 23 991 1013 991 1013 0.89
12 16 0.0054 0.34 11.7 2.3 1 23 1019 1041 1019 1041 0.95
13 16 0.0061 0.39 11.6 2.6 1 23 1131 1153 1131 1153 0.97
14 16 8e-05 0.0051 17.5 1.2 1 23 1159 1181 1159 1181 0.99
15 16 4.2 2.7e+02 2.6 1.3 1 23 1273 1295 1273 1295 0.95
16 16 0.0089 0.57 11.1 5.6 1 23 1306 1328 1306 1328 0.98

Sequence Information

Coding Sequence
ATGGGTCTTCAATACGCAGATATAGAAATGGTTAGCTGTAACAGTGACAATGACACAAATACCGAAACAGTTCACAGAAAAGATGCTTTAGAATTCTTACAAGAATCACAAGATTTGCAGTCACTTAACAATACCTCGGAAGAAGGGAAGACACTTAAGCAGAGCAGAAAAATTCCAAGGCCAATACCGCAGCTGATACCCTTAAATTCATCAACTCCAAATCAAAACAAATCACCACTAGGGGAGCCACCACTCAAAAAGTTCAAAGAAGATCCAGTTTTCGAATCCAAAAATACAAACACAGTCGACAACGTCGAAAATTTGCCATCAGACATCACTCTTATACCCGTAAATAACGTCACTCCAATCACAACTAAAGAACCTGGTATCAGAAAAAAAAACGAATCATTTTTCGATAGACTAAAAGAAAGATTATTAACAGCAACTGGAGAAGAGGGAACTTTAACCTGCAAGAACTGTGGTTTTGAAAGCAAATGTTTATCAGAGCATTCTGTACATGAGAAAACTTGTACAATACCTACTAACAGGGTTTTGGCAAATAACACACACACAAGTCTTGGCTCCACGCGTTGTCAAAATTGTAGACATAGATGTAAATCGAGTGCCGATTTATATATTCACATGCAAACATGCAGTAAGCAACAGAAACTAGTGAATGAAAAGATACTTGATAATGAAAGCAAAAACGAAGCTACCACATCCACTCTAGAATCAGATATAACCAAAGAAGAGCCACACCCAATGGAGAACGTTGTATTCGTATGGAATAATATAAACCACGATAACGTGAAGTTTGAAACCCCATTGGATATAAATATCAATGATGATTCCACTCTGCCTGAATTAGGCAAACTTTACGATTCTGAAATTGTCGATGACAATGAAGGTATGAATTTGTCGCCGAGCCAAGCTGCAGGTAAAAGGGTATTTAAATGCCCCCACTGCTCATTTTGGGCGTCAACGGCATCAAGATTCCACGTTCATATTGTTGGTCATTTAAACAAGAAACCGTTTGAATGTTCGCTTTGCAAATATAAGTCTAATTGGCGATGGGATATTACCAAACATATAAAGCTCAAGTCTGCAAGGGACCCAGAACACAATGATGCCAAAGTGTTAATGACCGATGAAACTGGAAGGAGGAACTACAGCAAATACAATAAATTCTTAGCTGTGCCAATGGTTAACGAATATGGAGAAACCCAGTTTGACTACTTTGATCCAAATGCACTGAACGGTAACATGGATCTTGATGAATCATTCAACGAAACGAATGAAAACGTCAATATTTCGCTTGAAATGCAGCCGCTTAATCTGCAAAACCCCCTACACGGAGAGCTCAAATTTGAGACAATGGATGACAAAAGTGAAGACTCCAGGAAACCTAAGAAAACAATGTGGAAATGCAAAAAATGCAATTACAAGGATCCGTCGAAGGAAGCGTTACTAACACACGTTCGAGAGCATTCTAAACCTGAAGGCAGCCAGGAAGAAAACAAGGCTATGGCATTCAATAAAAAGCCCGAGAACACCCCTGACCCGGCCGATTTAGCATACCGATGTGGTCATTGCAACCAATTATCAAACTGGAAACACGTTATACAGAGACACTGCCGCTTGAAGCACGATGGGGTGATTAAAGTTATAACTACAGTGAAGCCGAAGTCTGAGGTTTCGATATCATTGAACGAATTTAATGACACCTGCACCAAATGCCCATTCAAAGCAACGGATAGAAAACAACTCATAAGTCACCTACAACAGCATCAGCCTTCACCGCAGTCAATATTCAAGTGTTATTTCTGTCCGTATTTCGTAAAAACTGAGCATGACTTATTGCAACACCTCTCTTTACACGGGGTGACAGATCCAGAAGAGTACATTGCAAAGGCAATGGGGTGCAAATCGCCTCTTATAGAACAACAAGGGCATTCAGGAACCTCAAACTCAACAAAACGTCACAAGTGTACGGAATGTCCATATGAAACCAACAGTAAGTCCCAGTTTATGTATCACGAGCAATTTCATAGACTCCCAGCTGACACCCCGTACAAATGTCAGGAATGCAACTACAGCGTATCAAAGAGGCATTTGCTTCACCAGCATATGAGAGTACACGGAATTACGACAAAGAAATCAGAAATGGACCTCGAGTTGGAAGCATCTTCGTCCTCTTGCAAGATAGAGGGCAAAATGGACATCCCTATAGACCTAACTGAAATACCGTTTGTGTGGGTTTCTGCAAAAAATGAATTCCATAAAATGTACAAGTGCCGTTACTGTTCTTACGTTAATTCTCAGAAGTGCAAAATACCAAACCATGAAAAAATTCACTGCATTGTTTTTGAAAACAGTGACATGACTATTTATAAATGTTTGGAATGCAAATTCACATGTGACAATGCTGGAAGATTAGCTGAACATTCAAAAACACATGGGGAAATTTATGGTCGTATCTACTGCCCTGTAGAACCCGATGTATTGGATGAAGAACAGATCGCAAAGTTACGTAAAGTAATAGAAGCCGATAAACTAAACATCTCTGATTGCCCCAAAGAAGAGTTTATTTCAAAGGAATATGAAGAAATAAAAATATTATATTTTTGTCACAAATGCCCGGCTAGATTTTTCATTGATAGTGATTTAAGGGTTCACGATAAATTCCACGACCTAATGTTTGTAAATAAATGCAAGTACTGTGAATTTTCAGTTCCTCAAGAAAGTGAATTAACCGCTCACACAGCATGCCATTCAGATGAATACCAGACGAAAACAAAAATGCTTAAGTTCATGCACAGATCCCACCCTGCGCATAAAGAACCTAAACTGGAACTCATACATTGCCCAGTGACCTCAGATATAAACTGGACAATTTCGCACCCAACAAAAAATTATGACCTAGTAGATTCTACGAAAAAGTGCAATGAAAATCGAAGCGTACCCAAACAATATTTTTGCAAAGAATGCCCAGCGAAATTCTTTAAAACTTCGGCTCTCAGTTATCACGCAGGATTACATGGAGGAGAGGGAGATCACAAGTGCAAAAAATGCAGTTATACTGTCAAAAATTTAGGGAATTTGGCCAAACATGAATCGTTACATGAAAATGAAGGTAAAACGACCACATGTGACTACGAATCTGGTGAAGATAATGACTACAAAAACATTCCTCTGTCTGGCACAGATCTATTTCAAAGGAAAACAGAGGCACAAAAAAGAGTGCTGTCAGACAAAAATAAATTAGTTAAACCGAACGACCACTTCCCACCTGTACTCCAAGCAGATCCACAATTTGGCTATCTAATGCACGGCAATCCAGAGTTTATTTATCCTACATATTTGAAAAATGGACGTCAGAAAGAGAAACGATACAAATGCCACAAGTGTCCATCAGCATTTGAGAAAAGAGAACAATACAAGATACATTTATCATTGCATGGATCTAAACAGAGATATAAATGCGAAGTCTGCGATTATTCCGTAAAATATTACGCCAATTATGTGCAGCATATGAGAAAACATCAAATGAACGACGAAGCTCAGGCGGAGAGAAAGAAAAATAACGAAGAGATAAATGAAGCTGAAAATGAAACACAAGAAGACAAAACAACAAAAGGAAACGTTAAACTAGCTATAAAAACAATGCCAAAGGGGCCGACCAGACCGAAAACCGATTTTCAGCAGTTTTCTATCAGTGACCAGCAGACACTTCGACTGCTGCAATTGAGACGCTCTATAAATAACGCTGAAAAGGAAAAGAAACCAGATCCGTCCCCTACAAAGGAACGCAAGCTACATATGTGTTTACTATGCCCTTACTCAAATCAGCGTCAAGATGCTCTCGGAAACCACTACAAACGGCACGACGACATCACTAACTCTAACAACGGGACCCACAAGTGCTCCCATTGTGATCTCGTTGTCGTACAATCACACTTTCTGCGCGAACATTTAAAAACTCACTTTAATTATCAGAAGCATCTGATTCCTGAATGTTTCGCAGCCAGTGAAGGTGTTACGTTTGTCATAACAAAAGAAGAAGAGGATGATGATTTTAGTAACAAGACAGACGATGACAAACGTGAAAAGAAAAACGAAGATATAACTGATAAGGAAATAAAAAGTGAAAAGAAGAGCAATATCTCAAGTGATAAGAAAAGAGTTGACACGAGTGGCAACAAAATTGGTGATACGAGTGAAAAGAAAGGAGAAGCTAAAAAGAAAATTGACATTTTAAGTGCCCTGAAAAGTGACCCTAGAATTGTAAAATCTTCAAATGATACCACAATCGAGTTTGATGACAAAATTTGTTACGATTCGAAGGATAACAAGATTTTTGTAAGACTTAAAACAGGGGAACTTGTAGTAGAATAG
Protein Sequence
MGLQYADIEMVSCNSDNDTNTETVHRKDALEFLQESQDLQSLNNTSEEGKTLKQSRKIPRPIPQLIPLNSSTPNQNKSPLGEPPLKKFKEDPVFESKNTNTVDNVENLPSDITLIPVNNVTPITTKEPGIRKKNESFFDRLKERLLTATGEEGTLTCKNCGFESKCLSEHSVHEKTCTIPTNRVLANNTHTSLGSTRCQNCRHRCKSSADLYIHMQTCSKQQKLVNEKILDNESKNEATTSTLESDITKEEPHPMENVVFVWNNINHDNVKFETPLDININDDSTLPELGKLYDSEIVDDNEGMNLSPSQAAGKRVFKCPHCSFWASTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNDAKVLMTDETGRRNYSKYNKFLAVPMVNEYGETQFDYFDPNALNGNMDLDESFNETNENVNISLEMQPLNLQNPLHGELKFETMDDKSEDSRKPKKTMWKCKKCNYKDPSKEALLTHVREHSKPEGSQEENKAMAFNKKPENTPDPADLAYRCGHCNQLSNWKHVIQRHCRLKHDGVIKVITTVKPKSEVSISLNEFNDTCTKCPFKATDRKQLISHLQQHQPSPQSIFKCYFCPYFVKTEHDLLQHLSLHGVTDPEEYIAKAMGCKSPLIEQQGHSGTSNSTKRHKCTECPYETNSKSQFMYHEQFHRLPADTPYKCQECNYSVSKRHLLHQHMRVHGITTKKSEMDLELEASSSSCKIEGKMDIPIDLTEIPFVWVSAKNEFHKMYKCRYCSYVNSQKCKIPNHEKIHCIVFENSDMTIYKCLECKFTCDNAGRLAEHSKTHGEIYGRIYCPVEPDVLDEEQIAKLRKVIEADKLNISDCPKEEFISKEYEEIKILYFCHKCPARFFIDSDLRVHDKFHDLMFVNKCKYCEFSVPQESELTAHTACHSDEYQTKTKMLKFMHRSHPAHKEPKLELIHCPVTSDINWTISHPTKNYDLVDSTKKCNENRSVPKQYFCKECPAKFFKTSALSYHAGLHGGEGDHKCKKCSYTVKNLGNLAKHESLHENEGKTTTCDYESGEDNDYKNIPLSGTDLFQRKTEAQKRVLSDKNKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCEVCDYSVKYYANYVQHMRKHQMNDEAQAERKKNNEEINEAENETQEDKTTKGNVKLAIKTMPKGPTRPKTDFQQFSISDQQTLRLLQLRRSINNAEKEKKPDPSPTKERKLHMCLLCPYSNQRQDALGNHYKRHDDITNSNNGTHKCSHCDLVVVQSHFLREHLKTHFNYQKHLIPECFAASEGVTFVITKEEEDDDFSNKTDDDKREKKNEDITDKEIKSEKKSNISSDKKRVDTSGNKIGDTSEKKGEAKKKIDILSALKSDPRIVKSSNDTTIEFDDKICYDSKDNKIFVRLKTGELVVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00023319;
90% Identity
-
80% Identity
-