Talt010078.2
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- lrrfip2
- Assembly
- GCA_947859335.1
- Location
- OX401976.1:16156859-16171083[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 1.4e-74 1.6e-70 238.1 24.2 1 266 120 377 120 401 0.90 2 6 2 2.2e+04 -7.6 10.5 227 274 428 476 421 494 0.52 3 6 2 2.2e+04 -53.0 65.7 4 283 598 888 597 901 0.40 4 6 2 2.2e+04 -53.4 66.5 4 284 782 1073 781 1094 0.41 5 6 2 2.2e+04 -51.4 64.2 4 284 920 1211 918 1224 0.41 6 6 2 2.2e+04 -44.4 55.0 4 192 1012 1208 1011 1301 0.34
Sequence Information
- Coding Sequence
- ATGGGCCACCAATCCAAAACTGCAACGCCTGACAATAGCGACGACGAGAGCGGAGAAGCATTCACTGACGGAGACTTTGGAGACTCCGATGACGGTATTGCGGTAGAACGTAGCGATGACTCTAACACCTCCCTTATTCCAGTCAATGAAACAGTGAACACCGAAGTCATGGAGATAGCTCACGGCGCTCTTAATGGTTTCGATGAACACGATCACGCTAAGGTTAACGGACATAAAAACAGTGATAGTGATTTGGAGTGTCGCAGCAACGGAGATGCAATGCCGGACCTCCGGAGGGACTCCCACGGGGATCAGAATCCTTCCATTGTCGGCATTCTCGGTGGCCAACAGGACCATGCGGAGCAGCGGCTAGCGGCGCGGCGCGCGGCGCGAGCGGAGGCGCGCGAGATACGCATGCGCGAGCTGGAGCGCCAGCAGCGCGAGCAGGAGGACCATGCTGACAAAGCATACGACATGTACGCCGAGACGGTGGGGCGGCGGGCGGGCGGGCGGCTGGCGGCGCTCAGCCCCGCGGCGCTGCACTCGCCGCGGCGCGCCTCCGAGGACTCCGCCGACGACTCCTTCAACGTCAAGGACCTCAGGCATGAATTGAAGGAGGTAGAAGAGAAGTTCCGCAAAGCTATGATCCTGAACGCGCAACTGGACAACGACAAAGCGGCGCTGGGCTACCAGCTGGAGCTGCTCAAAGACCGCATTGAGGAGCTCCACGAGGAATACGCGCAACTACAGCGCGAGCACAAAGAGAAGTGCTCAGTGCACGAGCGTCTAAAACGCGAGCACGTGGCCCTGGAGCGGGAGCTGCAGTTGGCGCGCGACGCGGTGCGCGCGCGCGACGCGGCCGCCGCGGCCGCCGGCTGGGCCTTCGTGGACGCCGCGCCCGCCAGCGACGGCGCCGGCGACCCCGCCGCGCTGCCGCTCGCGCTCGTCACGCTGCAGAACGAGAAGCTGCTCAACGACGCCGGCGAGGGCACGCTGGACGTGCGGTTACAGAAGCTGCTAAGCTCCAAGCAGAGCTTAGAAGGAGAGGTGCGGCGCCTGAAGCTGCAGTTAAATGAAGAACGGCACAACGGGGATGCGCGTGCGCAGGACCTTCAGTTGGAGACCGAGCTGGAGGCGCTCCGCAAGTCGACGGCGGAGGCGAAGGCGCGCGCGGCGCGGGCGGAGGCCGAGGCGGCGCTGCAGGCCGCCGCCGCCACGCGCCTCGGGGCCCAGCTGTCGCGCCTGCGCGCGCAGCACGACGCGCGCGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTCAGTACACTCAGCAGGGAGGAACAGCTGTCAGCAGCACGGCGCTGCAGGCAGCTGTCGCGCCTGCGCGCGCAGCACGACGCGCGCGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTCAGTACACTCAGCAGGGAGGAACAGCTGTCAGCAGCACGGCGCTGCAGGCAGCTGTCGCGCCTGCGCGCGCAGCACGACGCGCGCGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTCAGTACACTCAGCAGGGAGGAACAGCTGTCAGCAGCACGGCGCTGCAGGCAGCTGTCGCGCCTGCGCGCGCAGCACGACGCGCGCGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTCAGTACACTCAGCAGGGAGGAACAGCTGTCAGCAGCACGGCGCTGCAGGCAGCTGTCGCGCCTGCGCGCGCAGCACGACGCGCGCGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTCAGTACACTCAGCAGGGAGGAACAGCTGTCAGCAGCACGGCGCTGCAGGCAGCTGTCGCGCCTGCGCGCGCAGCACGACGCGCGCGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTCAGTACACTCAGCAGGGAGGAACAGCTGTCAGCAGCACGGCGCTGCAGGCAGCTGTCGCGCCTGCGCGCGCAGCACGACGCGCGCGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTCAGTACACTCAGCAGGGAGGAACAGCTGTCAGCAGCACGGCGCTGCAGGCAGCTGTCGCGCCTGCGCGCGCAGCACGACGCGCGCGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTCAGTACACTCAGCAGGGAGGAACAGCTGTCAGCAGCACGGCGCTGCAGGCAGCTGTCGCGCCTGCGCGCGCAGCACGACGCGCGCGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTCAGTACACTCAGCAGGGAGGAACAGCTGTCAGCAGCACGGCGCTGCAGGCAGCTGTCGCGCCTGCGCGCGCAGCACGACGCGCGCGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTCAGTACACTCAGCAGGGAGGAACAGCTGTCAGCAGCACGGCGCTGCAGGCAGCTGTCGCGCCTGCGCGCGCAGCACGACGCGCGCGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTCAGTACACTCAGCAGGGAGGAACAGCTGTCAGCAGCACGGCGCTGCAGGCAGCTGTCGCGCCTGCGCGCGCAGCACGACGCGCGCGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTCAGTACACTCAGCAGGGAGGAACAGCTGTCAGCAGCACGGCGCTGCAGGCAGCTGTCGCGCCTGCGCGCGCAGCACGACGCGCGCGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTCAGTACACTCAGCAGGGAGGAACAGCTGTCAGCAGCACGGCGCTGCAGGCAGCTGTCGCGCCTGCGCGCGCAGCACGACGCGCGCGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTCAGTACACTCAGCAGGGAGGAACAGCTGTCAGCAGCACGGCGCTGCAGGCAGCTGTCGCGCCTGCGCGCGCAGCACGACGCGCGCGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTCAGTACACTCAGCAGGGAGGAACAGCTGTCAGCAGCACGGCGCTGCAGGCAGCTGTCGCGCCTGCGCGCGCAGCACGACGCGCGCGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTCAGTACACTCAGCAGGGAGGAACAGCTGTCAGCAGCACGGCGCTGCAGGCAGCTGTCGCGCCTGCGCGCGCAGCACGACGCGCGCGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTCAGTACACTCAGCAGGGAGGAACAGCTGTCAGCAGCACGGCGCTGCAGGCAGCTGTCGCGCCTGCGCGCGCAGCACGACGCGCGCGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTCAGTACACTCAGCAGGGAGGAACAGCTGTCAGCAGCACGGCGCTGCAGGCAGCTGTCGTGCCTGCGCTCGCAGCACGACGCGCGTGACGACGCCGAGGAGCAGCTCAAGCAGGAGCGGCGCCGGCTGCAGCGCGAGGTCAGTACACTCAGCAGGGAGGAACAGCTGTCAGCAGCACGGCGCTGCAGGCAGCTGTCGCGCCTGCGCGCGCAGCAAGACGGAAGAGCAGCTGTCGACCGCAGGGGAGGAACAGCTGTTGGCCGCAGGGGAGGAACAGCTGTTGGCCGCAGGGGAGGAAAAACTGTCGGCAGCGGGGGAGGAACAGCTGTCGGCCGTAGGGGAGAAACAGCTGTCGGCAGCAGGGCGCTGCAGGCCGCGGCCGCCACGTGCCTCGGCGCGCAGCTGTCCTatttattatttttgatgtgtaacatctttcctctagctttcctgcgggagtga
- Protein Sequence
- MGHQSKTATPDNSDDESGEAFTDGDFGDSDDGIAVERSDDSNTSLIPVNETVNTEVMEIAHGALNGFDEHDHAKVNGHKNSDSDLECRSNGDAMPDLRRDSHGDQNPSIVGILGGQQDHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAGGRLAALSPAALHSPRRASEDSADDSFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHKEKCSVHERLKREHVALERELQLARDAVRARDAAAAAAGWAFVDAAPASDGAGDPAALPLALVTLQNEKLLNDAGEGTLDVRLQKLLSSKQSLEGEVRRLKLQLNEERHNGDARAQDLQLETELEALRKSTAEAKARAARAEAEAALQAAAATRLGAQLSRLRAQHDARDDAEEQLKQERRRLQREVSTLSREEQLSAARRCRQLSRLRAQHDARDDAEEQLKQERRRLQREVSTLSREEQLSAARRCRQLSRLRAQHDARDDAEEQLKQERRRLQREVSTLSREEQLSAARRCRQLSRLRAQHDARDDAEEQLKQERRRLQREVSTLSREEQLSAARRCRQLSRLRAQHDARDDAEEQLKQERRRLQREVSTLSREEQLSAARRCRQLSRLRAQHDARDDAEEQLKQERRRLQREVSTLSREEQLSAARRCRQLSRLRAQHDARDDAEEQLKQERRRLQREVSTLSREEQLSAARRCRQLSRLRAQHDARDDAEEQLKQERRRLQREVSTLSREEQLSAARRCRQLSRLRAQHDARDDAEEQLKQERRRLQREVSTLSREEQLSAARRCRQLSRLRAQHDARDDAEEQLKQERRRLQREVSTLSREEQLSAARRCRQLSRLRAQHDARDDAEEQLKQERRRLQREVSTLSREEQLSAARRCRQLSRLRAQHDARDDAEEQLKQERRRLQREVSTLSREEQLSAARRCRQLSRLRAQHDARDDAEEQLKQERRRLQREVSTLSREEQLSAARRCRQLSRLRAQHDARDDAEEQLKQERRRLQREVSTLSREEQLSAARRCRQLSRLRAQHDARDDAEEQLKQERRRLQREVSTLSREEQLSAARRCRQLSRLRAQHDARDDAEEQLKQERRRLQREVSTLSREEQLSAARRCRQLSRLRAQHDARDDAEEQLKQERRRLQREVSTLSREEQLSAARRCRQLSRLRAQHDARDDAEEQLKQERRRLQREVSTLSREEQLSAARRCRQLSCLRSQHDARDDAEEQLKQERRRLQREVSTLSREEQLSAARRCRQLSRLRAQQDGRAAVDRRGGTAVGRRGGTAVGRRGGKTVGSGGGTAVGRRGETAVGSRALQAAAATCLGAQLSYLLFLMCNIFPLAFLRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -