Talt014126.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- -
- Assembly
- GCA_947859335.1
- Location
- OX401983.1:15185573-15190723[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.9e-11 1.7e-08 34.4 0.0 4 39 175 211 172 215 0.89 2 4 5.1e-12 4.4e-09 36.2 0.2 2 39 227 264 226 267 0.92 3 4 1.2e-15 1.1e-12 47.8 0.1 2 45 282 326 281 326 0.96 4 4 1.1e-18 9e-16 57.6 0.0 1 44 333 377 333 378 0.96
Sequence Information
- Coding Sequence
- ATGCCCGGCCGCGGTCTCCAGCAGGTCAAGCGTGAGCCGGCCTCGGAAGAAGACAGCTGCAGCAATTCGCAGTTCACCCACAGCTTCCAGTCAAATCAGATACCGTCGCTGGAGCTCCGTCTGGTGAAGCTCGAGCCGGGCATCGAGGACAATGCGTCCGCGCACATCCTACGCCATCTGCAGGGTTCGGAGGGTCTGGAGGAGCTGGCGCCGCCGGCGCCGACGGGCCCCACGGCCACACCGGTGCGCGTGCGCGTGAAGCAGGAGCCCGTCGAGCCCGCCCTCACCCTCGAGACGCTGGCGCCCGCTCTGCACTGTGACACAAGAGGCACAACGCTGATAGATAGACACAAAACGCTGCCCGGGGCGAATGACGCCGACTCCATGGACTTTATGCCGCTCCTTGCTGTCAAAGACGAACCCTTGTCGGAAGGAGAGCAACATCACCTGAGCGGGTCCGATACGAGTGACTCCAGCATTCAGCCCGAGCTGACGCGGAGCCCTAAGAGCTGGACACAACAGGACATGCAGCTGGCGCTTGAAGCACTACGGAAGCACAACATGAGCCTCACTAAGGCATCAGCCATGTACGGCATTCCGTCCACAACGCTGTGGCAGCGCGCGCACCGGCTCGGCATAGACACGCCGAAGAAGGAAGGCACCTCGAAGTCCTGGAGCGAGGCGGATCTGAGAGGCGCCCTTCACGCGTTGAGGTCTGGAGCTATTTCAGCAAACAAAGCTAGCAAGGCGTATGGCATCCCCAGCAGCACGCTGTACAAGATCGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCCACGGCCTGGCGCCGCGCCGACCTGGAGCGCGCGCTGGCCGCCATCCGCGCCGGCGCCTGCTCCGTGCAGCGCGCCGCCTCGCAGTTCGGCATACCCACCGGCACTTTATATGGACGATGTAAGCGTGAAGGTATCGAGTTATCGCGATCAAACCCTACGCCGTGGTCCGAAGATGCGATGGGCGAAGCGCTGGAAGCAGTTAGAGTGGGACAGATGTCTATAAATCAAGCAGCAATACATTACAACTTGCCTTACTCGTCGCTATACGGGCGGTTCAAGAGATGCAAATATCCAAGTTCTCAAGTAATCCCTCAGCAAGCCGTAGCCGAAAACATGGAAATGGACCCACAATCACAACCTCAAGAGATTTATTATCAACATCAAAACGTACCTTTAAATCAGAACATGCACCATCCTGAACAAGAACTTCAGAATCCGTATCTTCAGCAGAGTTATGGTATGGATGATCCTGGGTTTAATGCGATGCATAGCAACATGCTTACGGAGCAGAGTTATGCCATGTATTACCAGGGCTGCAACGGCATTGTCACCAGTTGA
- Protein Sequence
- MPGRGLQQVKREPASEEDSCSNSQFTHSFQSNQIPSLELRLVKLEPGIEDNASAHILRHLQGSEGLEELAPPAPTGPTATPVRVRVKQEPVEPALTLETLAPALHCDTRGTTLIDRHKTLPGANDADSMDFMPLLAVKDEPLSEGEQHHLSGSDTSDSSIQPELTRSPKSWTQQDMQLALEALRKHNMSLTKASAMYGIPSTTLWQRAHRLGIDTPKKEGTSKSWSEADLRGALHALRSGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALAAIRAGACSVQRAASQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYPSSQVIPQQAVAENMEMDPQSQPQEIYYQHQNVPLNQNMHHPEQELQNPYLQQSYGMDDPGFNAMHSNMLTEQSYAMYYQGCNGIVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680441;
- 90% Identity
- -
- 80% Identity
- -