Talt016797.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- NFKB1
- Assembly
- GCA_947859335.1
- Location
- OX401968.1:23807048-23821795[+]
Transcription Factor Domain
- TF Family
- RHD
- Domain
- RHD domain
- PFAM
- PF00554
- TF Group
- Beta-Scaffold Factors
- Description
- Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-25 1.6e-21 77.3 0.0 1 123 8 143 8 164 0.84 2 2 3.2e-07 0.0018 18.6 0.0 124 168 228 281 181 282 0.66
Sequence Information
- Coding Sequence
- ATGTCCTCAAGGCGATATGTCGTCACCATCGTGGAGCAGCCAGCACCGAAGTCTCAAAGGTTCCGGTACGCCAGCGAGATCAATGGAATGCGGTCGGCGGGTTGGATCACCGGCGTCCGCAGCAGCCCCGCCTGTCCCACGTACCCAAGGATACGCGTCGAGGGATACAGCGGACCCATGTTCGTCATGCTCTGCCTTGTCAACCCATACGACAAATTGGTCCACCCTCACCACGTAACAGGGAAGGAAGTCAAAAGCGCGAAGGAACAACGCTACTGCAAAAACGGCTTATTCGTCGTATACACCGACGGCCCTGACGTGTGCTTCAACAACATCGGGATCCTCTGCGTGAAGGGCAAGAGTAGCACCGACATCGAAGCAGCGCTGAACCTTCGCAAGGACCTCAAAATTGACCCCTTCAGAAAAATAGTCCGACATGTTTCGAACTCATATGGAGTCCTTCTTCAGGGGTTGAGTACGGTCGCGCTCACTGCAACCCACGCACTGCCGCCCTCCGTGCGGCGCGTTGCGCCCGAGCCGAGCCACTGTGAGTTCGGCATGTTTGCTGCCGTTCACCACCAACAACGAGCCGCAGCCTGGTGCTTCAGCAACACCGGTGCAGCCCCCCGCCGCCCCCGCGCCCTCGGCTCGGGCGCAACGCGCCGCACGGAGGGCGGCAAGGGTTTCCCGCATTTGCAAGACCATAACCGCATCGACTTTTCTGCTGTCCGTCTCTGCTTTAACGTGTTCCTACCCAAGCAAGAGTTGACAGATGCTGACCGTTTCGACTGTCGAATGTACACCAAACCCCTAGACTCAGTCTTGTCAGATATTATCTACGACGCTAAAAAACTACCTGACCTGAAGATTGTACATTTGAATGACTGCGTAGGATCGATGAGAGGAGGTACCGTGATGGTCCTGCTGTGTGAAAGGTATAATGATCCACCGCCGGAGGTAGTTTTCATGGAACCAGGATGGAAGGCAAAAGCTCACGTTTCTTTATACCACAAGAAGTTGGCAATAGTGTTCCAGGCACCGCCCTACCGAGATCCAAACTGCACCAAATCGGTCCAGGTAGATATAGAGTCACCTAAACTGGTGGAAGTGTACCTTCAGAAAAAGAACAAAAGAGGTGTCATGGAGTACAGCGATACTGTGACGGTCGAATATATTCCGGATCAAAAAACGAGAAAGCGGCCACCTTCTGACTATTTGGAGAATAAACTTCTAAAGAAGACTCTTTTAGAAGAATACTGGAATGACAAGGTGCCTTACCCCCCGCAGTTCGTCGAAAATCCGTCTCCCGAACAGGTGACTTGGTGTTACTAG
- Protein Sequence
- MSSRRYVVTIVEQPAPKSQRFRYASEINGMRSAGWITGVRSSPACPTYPRIRVEGYSGPMFVMLCLVNPYDKLVHPHHVTGKEVKSAKEQRYCKNGLFVVYTDGPDVCFNNIGILCVKGKSSTDIEAALNLRKDLKIDPFRKIVRHVSNSYGVLLQGLSTVALTATHALPPSVRRVAPEPSHCEFGMFAAVHHQQRAAAWCFSNTGAAPRRPRALGSGATRRTEGGKGFPHLQDHNRIDFSAVRLCFNVFLPKQELTDADRFDCRMYTKPLDSVLSDIIYDAKKLPDLKIVHLNDCVGSMRGGTVMVLLCERYNDPPPEVVFMEPGWKAKAHVSLYHKKLAIVFQAPPYRDPNCTKSVQVDIESPKLVEVYLQKKNKRGVMEYSDTVTVEYIPDQKTRKRPPSDYLENKLLKKTLLEEYWNDKVPYPPQFVENPSPEQVTWCY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -