Tyan060503.3
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- -
- Assembly
- GCA_030247195.1
- Location
- CM058070.1:295933218-295957306[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0068 66 5.8 0.0 22 44 214 236 206 245 0.85 2 8 0.0044 43 6.4 0.2 23 47 243 267 239 273 0.83 3 8 0.0099 95 5.3 0.1 23 48 271 296 268 301 0.85 4 8 0.0036 35 6.7 0.1 23 48 299 324 296 329 0.85 5 8 0.0082 80 5.5 0.0 23 52 327 356 324 357 0.86 6 8 0.049 4.7e+02 3.0 0.0 23 48 355 380 353 384 0.84 7 8 0.064 6.2e+02 2.7 0.0 21 46 381 405 378 411 0.87 8 8 0.00017 1.7 10.9 0.1 23 45 411 433 409 438 0.91
Sequence Information
- Coding Sequence
- ATGCTAGGCCAGGATCCGCTGTCTGACAACAAACATTCATTCGCCGTGTCACTATCGCTAGGAAACCCATTCATTAACATCAACAAGATCAAATACCCAAATACACACTTCCAGCATGATCAAATGCACACGAAGTCGACGTACTCTGGAAGATTGGTACACGAGAAAAGCATCGAGCACGTACATTCGTCAAATTCCACtcctCAACCAACTTTTGAAGATGGAGAAATCGAACTTTCCCGACCGGAAATGCTGAGTCAAGAACAGCTTGTCGAGAACAAACATTCACTCGCCGTGTCGCTATCGTTAGGAAACACGTTAATTAATCTCAACAAAATCAAATACACAAATGCCCAATCTCAGCATGATCAAATGTCTTCGATGCGTCCTGAAATGTTGGCTCAGTATCCACTAACGGACAACAAGCACTCGCTCGCGGTATCACTTTCGCTAGGGAATACATTAATCAATCTCAACAAGATCAAGTGTCCACAGTGTCGGAAGCGCTTTGATACGATGGAGGAAATGCAACAACACCGCACCAAACATCTgacagaaaataaatttaagtgcGAAATATGCAGTAAGGAGTTCCCTAGTCACAGCTCGATGTGGAAACACACCAAAGCCCACACCGGCGATCGTCCATTCGTTTGCCAAATCTGCAACAAGGGTTTCACGCAATTAGCTAACCTGCAACGCCATGACCTTGTTCATAACGGACTGAAGCCTTTCAAATGTCCAATCTGCGAAAAGTGCTTTACACAGCAGGCAAATATGCTGAAACATCAGCTCCTTCACACTGGACTTAAACCATATAAATGTCCGGTGTGCCAGAAAGCATTCTCTCAACAtgcaaatatgataaaacatcaGATGCTTCATACAGGTTTGAAGCCTTATAAATGTCCAGTGTGCCATAAGGCTTTCACCCAACACGCCAACATGGTTAAACATCAGATGCTTCATACCGGTTTAAAACCTTATAAGTGTCCTGTTTGTGATAAAGCATTTACCCAACAAGCCAATATGGTCAAGCATCAGATGCTACATACTGGAATCAAGCCATATAAATGTCCAACTTGCGATAAAGCTTTTGCCCAACAGGCTAACATGGTCAAGCATCAAATGCTGCACACTGGCGAAAAACCGTTCAAATGCAAAAGCTGTGATAAAGCATTCTCACAACGTGCCAATCTCAAGAAGCACGAGATGGTCCACCTTGGAATACGTCCGCACACCTGTCCATTGTGCTCCAAATCGTACTCGCAATATTCAAACCTTAAGAAGCACTTACTGGTCCACCAGAAGCAGTCAATGAAGCAGCAGCAGAACGGACAAGTGATGGTGATTCTGTACAACTGTCAAACATGCAAAATGCAGTTTGAAAACATTCTCGAATTTGAACGGCACACAAAGCAATGTAACGAATTAAACAATGGCAGTCACGGTTTGAAGCTGGAAAATATCAATATAAAGAGCGAAATTGACATTGACGGCAGTTCCAGTTCAGGAATGCCCCAACACATCACTATTCCGCACAGTCAACCGCAACCTCCCATGCACGTACCCTCTGCGATACTGACCTCAGTGATCTCATCATCCTCTGCAGTGTCCAATGCTCACACTCTAAGTACTGCGCATGCTAACCACCATCCAGGTGTACATCCACAACATCCTCAACCGCAACATACACCACCGGCGCAacatcagcagcagcaacaacaacaacaaggcATTCATCATCAACAACCTCCCCCATCCCATCAACATCACCCATCTCTCCAGCAGCAGCATAATCTTCCAATCCATCTTCAGCAGCAGCTATCACACCACCTAATATCTTCCCACCTCCCGCACCAGGATCACGGAGCAACTGATCTGCACCATCAGGTCAACTTCCACCATCCTCACATACCGCATATTCCTAACCTACCGCACAAAATCCTTTCGCCTCTGTTCCACATTCCTCCATTTAATAATAACCACAGCACATAA
- Protein Sequence
- MLGQDPLSDNKHSFAVSLSLGNPFININKIKYPNTHFQHDQMHTKSTYSGRLVHEKSIEHVHSSNSTPQPTFEDGEIELSRPEMLSQEQLVENKHSLAVSLSLGNTLINLNKIKYTNAQSQHDQMSSMRPEMLAQYPLTDNKHSLAVSLSLGNTLINLNKIKCPQCRKRFDTMEEMQQHRTKHLTENKFKCEICSKEFPSHSSMWKHTKAHTGDRPFVCQICNKGFTQLANLQRHDLVHNGLKPFKCPICEKCFTQQANMLKHQLLHTGLKPYKCPVCQKAFSQHANMIKHQMLHTGLKPYKCPVCHKAFTQHANMVKHQMLHTGLKPYKCPVCDKAFTQQANMVKHQMLHTGIKPYKCPTCDKAFAQQANMVKHQMLHTGEKPFKCKSCDKAFSQRANLKKHEMVHLGIRPHTCPLCSKSYSQYSNLKKHLLVHQKQSMKQQQNGQVMVILYNCQTCKMQFENILEFERHTKQCNELNNGSHGLKLENINIKSEIDIDGSSSSGMPQHITIPHSQPQPPMHVPSAILTSVISSSSAVSNAHTLSTAHANHHPGVHPQHPQPQHTPPAQHQQQQQQQQGIHHQQPPPSHQHHPSLQQQHNLPIHLQQQLSHHLISSHLPHQDHGATDLHHQVNFHHPHIPHIPNLPHKILSPLFHIPPFNNNHST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01471718;
- 90% Identity
- iTF_01462314;
- 80% Identity
- iTF_01462314;