Tyan012730.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- -
- Assembly
- GCA_030247195.1
- Location
- CM058068.1:187814201-187816642[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0037 0.38 13.3 1.0 1 23 122 147 122 147 0.96 2 12 0.0005 0.051 16.1 0.9 1 23 155 177 155 177 0.94 3 12 0.031 3.1 10.4 1.7 2 23 186 208 185 208 0.95 4 12 0.095 9.7 8.9 0.4 2 23 267 289 266 289 0.95 5 12 0.00024 0.025 17.1 0.2 1 23 321 344 321 344 0.92 6 12 0.0063 0.64 12.6 4.0 1 23 352 374 352 374 0.98 7 12 0.00029 0.03 16.8 4.7 1 23 382 404 382 405 0.95 8 12 9.4e-06 0.00096 21.5 0.3 3 23 413 433 411 433 0.95 9 12 1.1 1.1e+02 5.6 1.0 2 21 444 463 443 464 0.93 10 12 0.0013 0.13 14.7 0.0 2 23 472 494 471 494 0.96 11 12 0.051 5.2 9.7 0.2 3 23 502 522 500 522 0.91 12 12 0.00048 0.049 16.1 2.7 1 23 528 551 528 551 0.97
Sequence Information
- Coding Sequence
- ATGCGGCAACACTGCCCGGAACATTTCATCGATGGAACCGAGACGGGGAATGAGAAACCACGGGGTACGAGAGTGAACACCAGCAGTGGGAAAACCTCAGAGCACAGCGAAGAGGTTGAAAATTACTGCTGCTTCAGCTTTTGCGATGGGACCAAATTTTCGAAGCATTTTCTGCCTCAACCAACAACGGACAACTTTGACGGTCAAAAAATCGAATCCATCCTGATGAAACACTTTTGGTTTAAGACCGCAGATTGCCAGAACCAGTTCGTGTGCTCTAGTTGCTGGAAGAGGATATCGGACTTTCATCAGCTATACTGTGCGGTCGAGACACGCTGGTTCTATGTTAAACCAGCTTTACTGTTCCGTTGCGAAAAGTGTGACCACTCAAAGGCCTTCAGCACTGAAACTGACCTGCAGTTACACATTCTGTTGCTTCACTCTAAGGATACCGACAAAGTACACAACTGCGATCAATGTGATAAATCTTTTGCCACCGAATGGCAGCTTTCTAGTCACAAAGCATGGCACCAGGATGTGGATAATTTGAATATTTCGTGTACTGTATGCAACAAACAATTTGCATCAATGCACACCCGAAATGCTCATGTGCGAAATCAACATTTGGATTATTCGATAGCCAACATGGCAAAGGTAGTGATGAATCATGAAGGGGACGTAGCTGATAGTACGCTGATAGCGACAACAGAGACAGAAAAAGAAACCGCtaagaaaatacaaaaatcggCTGAAACAATAGCGCAGGAGGATGAATTGATCCGACAATTTTGCAATTTGTCCTGTAAAAGGTGTGAGTATGTTGGTGAGAATCTCTATCAACTTTTGAAGCACTATACAACCGATCACCAAATGCGTGGCTATGCGGAGTGTTGCGGAAACAAGTTTACCAAAAAACCTCGCTTGTACAACCACTGTCAATTGCATGTGAATCCGAATATGTTTCAGTGTGAGATATGCAGCAAAACCTTCTCTCAGGGTGAAGCGCTGGAACAGCACAATCAATGGGTACACACTCCTGACTCTGCAAAGCCATTCAAATGTGATATTTGTGATGCTgcattttgcaaaagttttcaGCTCCGGTTTCATATGAAGTACCACATtgccaaagaacaaaaaaatttccaaTGTAAAGATTGCAACAAATCCTTTGGCACCAATCTTTTACTTCAAGCTCATCGCCACAACCATCACGGAGCTTTCAGCAATTGGGCTTGTGATATTTGCGGCAAAGGTTTCACGCACAAGGCACTGCTGGAAAAGCACTACCTTCTGCATTCGGAGCAAGGCGCTGCAAGTTTAATGGTACAGTGCGGACACTGTAGCAAGTGGCTGAAGAACAAGGACACCTATCAGAGCCATGTGAAACGATGCCTCGCCAGTGGCTCTATTACTTGTGATGTTTGCGGGAAAAAACTAGCGAATGAGCCAGCCTTGGCACGACACAAACGAGTCATACACCGGCATCGTCCAATGCTTGCATGTAGTTATTGCGGTAAAGCGTACAAGGAAATTcggcgattgagagagcacgaAGCAAACCATCGTGGGGTTGTTTTGTACACGTGTCCTTACTGCCCGAAAACGAGTAATTCAAGTTCAACCATGCACAACCATAAGAAATCGGCTCATCCAGAGCAGTTTGCCGCTAGAAGGGCGGAACAAGCATGCATACAGTCGGATACATTGTTGTAG
- Protein Sequence
- MRQHCPEHFIDGTETGNEKPRGTRVNTSSGKTSEHSEEVENYCCFSFCDGTKFSKHFLPQPTTDNFDGQKIESILMKHFWFKTADCQNQFVCSSCWKRISDFHQLYCAVETRWFYVKPALLFRCEKCDHSKAFSTETDLQLHILLLHSKDTDKVHNCDQCDKSFATEWQLSSHKAWHQDVDNLNISCTVCNKQFASMHTRNAHVRNQHLDYSIANMAKVVMNHEGDVADSTLIATTETEKETAKKIQKSAETIAQEDELIRQFCNLSCKRCEYVGENLYQLLKHYTTDHQMRGYAECCGNKFTKKPRLYNHCQLHVNPNMFQCEICSKTFSQGEALEQHNQWVHTPDSAKPFKCDICDAAFCKSFQLRFHMKYHIAKEQKNFQCKDCNKSFGTNLLLQAHRHNHHGAFSNWACDICGKGFTHKALLEKHYLLHSEQGAASLMVQCGHCSKWLKNKDTYQSHVKRCLASGSITCDVCGKKLANEPALARHKRVIHRHRPMLACSYCGKAYKEIRRLREHEANHRGVVLYTCPYCPKTSNSSSTMHNHKKSAHPEQFAARRAEQACIQSDTLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01462456;
- 90% Identity
- iTF_01462456;
- 80% Identity
- -