Tyan000383.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- ZBTB41
- Assembly
- GCA_030247195.1
- Location
- CM058068.1:6593541-6596719[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.11 12 8.6 0.5 3 23 238 259 236 259 0.97 2 17 0.00028 0.028 16.9 3.3 1 23 266 288 266 288 0.98 3 17 0.0016 0.17 14.4 0.6 1 23 294 317 294 317 0.95 4 17 2 2e+02 4.7 0.8 1 23 329 352 329 352 0.78 5 17 0.00083 0.084 15.4 1.7 1 23 409 432 409 432 0.97 6 17 0.019 1.9 11.1 6.1 1 23 437 460 437 460 0.95 7 17 0.0076 0.77 12.3 3.0 1 23 472 495 472 495 0.96 8 17 0.095 9.7 8.9 0.7 1 23 514 537 514 537 0.89 9 17 0.00066 0.067 15.7 4.1 1 23 544 566 544 566 0.97 10 17 0.009 0.91 12.1 0.5 3 23 574 595 572 595 0.92 11 17 0.00056 0.057 15.9 4.2 2 23 651 672 650 672 0.95 12 17 0.0041 0.41 13.2 1.2 1 23 678 701 678 701 0.97 13 17 0.02 2 11.0 3.0 1 23 713 736 713 736 0.95 14 17 0.033 3.4 10.3 2.0 1 23 767 790 767 790 0.94 15 17 0.00092 0.094 15.2 4.0 1 23 797 819 797 819 0.99 16 17 0.0024 0.24 13.9 0.9 1 23 825 848 825 848 0.96 17 17 0.0088 0.89 12.1 0.5 1 23 858 881 858 881 0.93
Sequence Information
- Coding Sequence
- ATGGACACAGATACAATCCCGGATGTTCCAAATGACAACCCGGAAACCTACTGCAGGCTATGCTTTTCTGGCTTCTATGTGGAGCCGTTGTTTCCGATCGATTCCGAGCCAAAGCAGAGCCTAATCGATCTCATCAGCAAGCATGTTGAAATTTACATTACACCCGAGACGGATTTCCTCTGTTCTGTTTGTCGAATGTGCCAGATGACGCTGGAGGGCTTTGCCAAATATCGCGACCGCTGTCGCCAATTGGACGAGGTCTTGCAGCGCAAGCGGATGGATATGTTGCAGGTTCGGGTGAAGGCGGAACAGCAGGAAGAATTAACGCAGAATGCGATGGGTTTTGAACAGGATACGATTTACTGTTTGAGTGACACAGACGACGAAGAGTTGGATGATGAAAACGTGCGATCGACCGATGAACCGCCGGAAGAGGAAGAAGAAGTGATCGACGAGGAGGTTGAAGAGGAGCTGATCAAGGGAGACATTCTGATCAAGCCTGAACCGTACGATAATGAGTATGGCGAAAATCATCCACAACAGACCCCGACAATGGGTGAAGAAGATGTAGTCGTTCTTGATTCGGAAGAGGAGGAACAGTCAATGGAGGATTCTACCAGGGCAAGCAGTGAGGCACGAGGAGAAGAGCATGTCAAAGAAGAACCGACGAAACCTTTGCCATTTGAGGTCACGACTGACGGTGCGTATGGTTgcacaatttgccagcaaacaTTCCGCTTGATGAAGGAAATTAAGGGTCACATTCGCAAGGATCATCCTCAGGAATCACAGATATATTCCTGCAAATTTTGTCAGAAGAAGTTCTCCGACACAGGTTCACTGCGGGTGCACACCCGGTTTCATACAATGGATTTCCCGTTCTCTTGCGATGATTGTGGCGCTAAATTTACAATGAAACAACGACTAGAGAAACATGTGGCTCGCTACCACGATAAGGAATCGCCAAGTTATACAGATAAGCGTTTCACATGTACACTCTGTCCTCGTGTCTTTCTTCAGGAACAAGCACGGAACATGCACATTATTCACTTTCATGAGGTCAAACCAGTGGATGCAGCAGTGGAACCCAGTTTACCGGTAGAGCAGGTGTTCTACTGTGAAGTTTGCCAGGAACCGTTTGAAACGTGTAGTGAACATTTACAGGAACGCCACCCTGGAGCAGGTAAGGAGGGTGGTGAACCAAGACCGAAAATCACTAAACGTTATAAGTGCGCCGATTGTCCTAAACTATTTCGCCATCGGACTGCTTTCCGATCCCATGTGATGATCAATCACGGAACGATGCCCCACAAGTGTGACATTTGTGGAAGCTGTTTCGAGAGAAGAACAAAACTGATACACCATAAAGAGCGCTGGCATGGTGAAAACGCCAAGAATAAAGTCCTGGAGCGGTACAAATGCGATCATTGCGAGCGATTCTTTGTTAGGAATCAAGACCGATTCAGGCACGAGCAGATCATTCATAGCATAGAATCACCGGCTAAACTACCAACAGTGTGGGAGGGACGAAAGAGCAATTTCCCCTGTGCCAAGTGCGATCGAAAGTTCCCATCAATGAAAACGATGAGAATACACTTTGCATTGAAACATCCGGAAGTTCCAGTCAGATTCAAGTGTACTGTATGTTCCAAGCTGTTCAAACACAAAACTTCCCTGCGGGATCATATGGTAAATCATACTGGACAGCAACCATACGGTTGCGTACATTGTGAGGAGCGATTTGTCCGTAAGAAGGACATGGAACGTCATTTGGAAGGGGTTCATGGAGCAGAGGGAGCAGACAGTTCGGAGCAGAAAGAGCGATTTGCTTGTAAGTACTGTCCGCGAACGTTACTCTCGAAGACAGCACGATATCTGCACGTGAAACATAATCACGCTGACAAGGAACCGATTTCAAAGCAAGTTTTACTTTCACTACCCGATTCTCTCACCTGTAGCCACTGCAAAAAAACTTTCACTAGCCGGAACACTCTGAAGCTACATGTCCTTAATCACCTGGGCAAGTTGCCACACCAGTGCGATACGTGTGATGCCGGATTCTACAAACCGGCCGATTTGCTGAAACACAAACAACGCTACCACTCCGCAGGATCCTCTGTCAGTTTGGCCAGTCGCTTCAAATGCGCCTATTGTCCCCGTATCTTTATCCGAAAATCGGCTCGACGCTACCATCATACTGTTTTCCACGGCATGGAATCAAGAAAGAACGTATTAACACCATCATCCCGCCCCACTGGTTCCGTTAGAAAACGCATTAAAGTCGACCCGGATATGGAACATCCATGCGCCCTCTGTTCGTTGGTGTTTGTCACTACTAGCATGCTACAGACTCATCACCAGCAGCAGCACCCCGAGCAGGATTTCTTCTATAAATGTCCACACTGTCCGAAACGAACTGTACACCGCAACTCGTACCTGTCGCACATCAAGGTTCATATTGGAGGTTATCGACATCCGTGCGATGAATGTAACGCTCAGTTCGATCGGAAAGTAGCTCTGGTCAACCACAAGAGACGTTATCATGGCGAAGCTGCCAAGAGCAATTTGCGCTTCTACTGCACTCTGTGTAATAGAGAGTTTGTGCGCAATCAGGATCGCGTTCGTCACCAGATAGCCGTACATAACTACCAGGTGCAGGGGAGCAATGCCAACCCAAGCCCGGGTCCATCGAAACCCTCGTTATCTTCAGCTAAAACAAAGGTCGGCAAATTGAAGGTGAAGCAGGAACGAATTGTAGCAGATCACACTAATTTGGAGGGACCCATAGATGAGCCTAACCAATCAAGTGAGATCGTACCCTCAGACAGCAAAACGAATAAGAAGAAGGGCTTTGTTGTTGACAGTGATGTCGAAGATTATGGTGAAATAGATGACGGAACACTGCACCAGGAACGCGTTGATGAAGGAGATGGCGAGGTAAGTGAGGAGGCTATAGTGCCGACAATTTCTAGCGTAGTGTCCATTAAGCAAGAAGCAATTGCGTCGCGGAAAGGATACACTGATTATCCATCAGAGTTTTAA
- Protein Sequence
- MDTDTIPDVPNDNPETYCRLCFSGFYVEPLFPIDSEPKQSLIDLISKHVEIYITPETDFLCSVCRMCQMTLEGFAKYRDRCRQLDEVLQRKRMDMLQVRVKAEQQEELTQNAMGFEQDTIYCLSDTDDEELDDENVRSTDEPPEEEEEVIDEEVEEELIKGDILIKPEPYDNEYGENHPQQTPTMGEEDVVVLDSEEEEQSMEDSTRASSEARGEEHVKEEPTKPLPFEVTTDGAYGCTICQQTFRLMKEIKGHIRKDHPQESQIYSCKFCQKKFSDTGSLRVHTRFHTMDFPFSCDDCGAKFTMKQRLEKHVARYHDKESPSYTDKRFTCTLCPRVFLQEQARNMHIIHFHEVKPVDAAVEPSLPVEQVFYCEVCQEPFETCSEHLQERHPGAGKEGGEPRPKITKRYKCADCPKLFRHRTAFRSHVMINHGTMPHKCDICGSCFERRTKLIHHKERWHGENAKNKVLERYKCDHCERFFVRNQDRFRHEQIIHSIESPAKLPTVWEGRKSNFPCAKCDRKFPSMKTMRIHFALKHPEVPVRFKCTVCSKLFKHKTSLRDHMVNHTGQQPYGCVHCEERFVRKKDMERHLEGVHGAEGADSSEQKERFACKYCPRTLLSKTARYLHVKHNHADKEPISKQVLLSLPDSLTCSHCKKTFTSRNTLKLHVLNHLGKLPHQCDTCDAGFYKPADLLKHKQRYHSAGSSVSLASRFKCAYCPRIFIRKSARRYHHTVFHGMESRKNVLTPSSRPTGSVRKRIKVDPDMEHPCALCSLVFVTTSMLQTHHQQQHPEQDFFYKCPHCPKRTVHRNSYLSHIKVHIGGYRHPCDECNAQFDRKVALVNHKRRYHGEAAKSNLRFYCTLCNREFVRNQDRVRHQIAVHNYQVQGSNANPSPGPSKPSLSSAKTKVGKLKVKQERIVADHTNLEGPIDEPNQSSEIVPSDSKTNKKKGFVVDSDVEDYGEIDDGTLHQERVDEGDGEVSEEAIVPTISSVVSIKQEAIASRKGYTDYPSEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00949101;
- 90% Identity
- -
- 80% Identity
- -