Basic Information

Insect: Topomyia yanbarensis
Gene Symbol: -
Assembly: GCA_030247195.1
Location: CM058069.1:166738038-166740863[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.023 2.4 10.8 1.4 3 23 200 221 199 221 0.97

2 13 0.00066 0.067 15.7 0.5 2 23 234 255 234 255 0.96

3 13 0.0045 0.46 13.0 0.2 2 23 261 282 260 282 0.96

4 13 0.00033 0.034 16.6 3.5 1 23 288 310 288 310 0.99

5 13 1 1e+02 5.7 0.2 2 12 364 374 363 386 0.79

6 13 0.071 7.2 9.3 5.9 1 23 397 419 397 419 0.96

7 13 7.1e-05 0.0072 18.7 1.4 2 23 425 446 424 446 0.97

8 13 0.00042 0.042 16.3 2.4 1 23 452 474 452 474 0.95

9 13 2.2e-05 0.0022 20.3 2.3 1 23 486 508 486 508 0.98

10 13 8.1e-06 0.00082 21.7 1.7 1 23 528 550 528 550 0.96

11 13 1.2e-05 0.0012 21.1 0.8 2 23 557 578 556 578 0.96

12 13 1.8e-07 1.8e-05 26.9 0.3 1 23 584 606 584 606 0.99

13 13 0.063 6.4 9.5 0.1 6 22 616 632 616 632 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.023	2.4	10.8	1.4	3	23	200	221	199	221	0.97
2	13	0.00066	0.067	15.7	0.5	2	23	234	255	234	255	0.96
3	13	0.0045	0.46	13.0	0.2	2	23	261	282	260	282	0.96
4	13	0.00033	0.034	16.6	3.5	1	23	288	310	288	310	0.99
5	13	1	1e+02	5.7	0.2	2	12	364	374	363	386	0.79
6	13	0.071	7.2	9.3	5.9	1	23	397	419	397	419	0.96
7	13	7.1e-05	0.0072	18.7	1.4	2	23	425	446	424	446	0.97
8	13	0.00042	0.042	16.3	2.4	1	23	452	474	452	474	0.95
9	13	2.2e-05	0.0022	20.3	2.3	1	23	486	508	486	508	0.98
10	13	8.1e-06	0.00082	21.7	1.7	1	23	528	550	528	550	0.96
11	13	1.2e-05	0.0012	21.1	0.8	2	23	557	578	556	578	0.96
12	13	1.8e-07	1.8e-05	26.9	0.3	1	23	584	606	584	606	0.99
13	13	0.063	6.4	9.5	0.1	6	22	616	632	616	632	0.95

Sequence Information

Coding Sequence: ATGGACTATAAACCGAACTTTATATGCTTCGATCAAGTGTGTAGAATTTGTATGAAAACCAGTGATGGTTTGCAGTCAATTTTCGGTCATCCGCAAGACATTCCGGAAATTGTTATGCTGCTTTCAAAAGTTGAGGTTCTCGAAAGCGATAATTTACCGAAGCAGATATGTCCCGAGTGTATGACCTACGCTGGAAACGTAGTAGAGTTTAAGGAACGTTGCCTACAATCTGACCGAACATTGAGAGAGTACATTTCGGGTAGCTACGAAGATCGTAAGCAGAACTTTCTGAAACAGGAGCATGGACTGCTGGTGGAAGACACTGATAGTCTACCTCTGGGGCCAGAGTTTATCAAATGTGAGATCGATGAATCGGCCAGCGATAAGTCCGATGAAGGAGGTAACGATTTTGAGATTGTCGATGGAAATGACAGCTATAGTGAAGAAGATGATGCTGGCGATGAAAACTATCCTGAGCACgagaaagttaaaattgatCGTCGAATCCGAAGGCGGCGTAGGATACGGAAAACTGTGGAGGACGATTCGGATGACGAACCCTTGATCGTGAAGCGTATAAGAATAGAAACTCACGGTTGTACAACATGCGATGAAAAGTTTACAAACAAATCCCTCATCAAGTTTCACATGAAGAGTGATCATGCTGACGACAAAACCGCCCCGGAGGATAAGATAAGACGGTGTTTTTACTGTCCGAAGGCGTACTCAAACTATGAGCTTCTCAAAATTCATCTGAACTTCCATCCTCGAAATGAGTGGATCTGTCCAATGTGCGGTAAGGAGATGAAGAAGAAAGGAAAATTCATAGACCATTTGAGAATGCATGCAAATGAGAGACACTATAAGTGTGACATATGCGAAAAGGATTTTACCTCGCACAAGTACATTTCAAACCACatgaaaatgcacaaaaagaaggGTGAGAAGGAGGATAAATGCAAATCTGATGACTCGAGTGATAGCGAATTTGATCCGGCTGAAGATGAAAAGGAAGAAGAGGATGATGAAGATTTTAATTCGTCAGATAAGGATAAGAGTTCATATCAACCGAACCCCGAAGCTCCTAAGGTTTGTCCAGTGTGTGGTGAAACGTTTGAAAAGGTGATATACGTTAAATTCCATCTCGAAAGTGAGCATATTCCTCTGGATGAATCCACAGATAGAGTACATCATTGTGCGACATGCAAGAAAAATTACATGACATTCGAACAGCTGACTAATCATATGAAACTTCACTCGGAGAAAATCTGGAGCTGTCCTGAATGCAAAAAACAGTTCCGACGTTTGGACAAATATAAAGATCATCAGAAAATTCATCAGAATGATCGTACCTTCCTCTGTGCACATTGTGGTAAGGATTTCCCTACGACAAAGTACATGAACCGGCACCTACAAACACACATGAAGGAGAAGGTTCAAAAACCGGACGAGGAGTTTGAGTGTGAAGTTTGTGGTAAAAAGATGAAATACAAATCCAACTACACTAATCACATGAAAACCCACGGTCCGGAACATTCAAAGCAGATCAAGGCGGATCCAGATTCTCCGCCTAAGAAGATCTACCTTTGTAGTATATGCGGTCGGAATTGTGGTTCTTCAAGCAATCTAACAGTGCACATGCGTCGACACAACGGCCAAGCGATATGCTCCTGTTCTGTCTGTGGCAAAGGATATCCACGAAAGGCTGATCTGGTTATGCACATGAGGAGGCATACAGGTGAAAAACCATACGAATGTCCTACTTGTGGGCGTGGATTTGCTAGGAGAGATAAGCTTCGAATTCACATCCGAACTCACACCGGCGAAAAACCTTACGCGTGTCCTTGTGGGCGCGCATACGCTCAGAAAAATGATCTCAAGACACATCAGAAGCGCAACACGTGCGGTCAAAACTTTGACATCACCAAACTGATGGCGCCCTATCAGCCGTCGATTTGTGTTCGCCCTCAGCATGCTCCTCAAGCGGCCCCGAAGAGGGAGCTACCACCACCGCCAGTGCCGGTCTCCGCGAGTACAGCAGGTCCTTCAGTTTCGCAATCGTACCATAATACTAATCCCACCTATTCGGTTGCTCAACCGATGACTAGTGGAATGGTGAGTGGTATCGATAGCGGACACAGCATTCCTCCGTCTCCACATCATGATCTGAGCAGAATGTCTGACTCGGTGCCAAACAGTCCAGTGGATTTGATGACACATCGGCACCAGTTTGGAGCCTTTCCGGGTCACATGGTTCCGGGATTTCCCAATCCTTATCAGCAGCCTAAGGTAGACATGTGCAATCAGTGA
Protein Sequence: MDYKPNFICFDQVCRICMKTSDGLQSIFGHPQDIPEIVMLLSKVEVLESDNLPKQICPECMTYAGNVVEFKERCLQSDRTLREYISGSYEDRKQNFLKQEHGLLVEDTDSLPLGPEFIKCEIDESASDKSDEGGNDFEIVDGNDSYSEEDDAGDENYPEHEKVKIDRRIRRRRRIRKTVEDDSDDEPLIVKRIRIETHGCTTCDEKFTNKSLIKFHMKSDHADDKTAPEDKIRRCFYCPKAYSNYELLKIHLNFHPRNEWICPMCGKEMKKKGKFIDHLRMHANERHYKCDICEKDFTSHKYISNHMKMHKKKGEKEDKCKSDDSSDSEFDPAEDEKEEEDDEDFNSSDKDKSSYQPNPEAPKVCPVCGETFEKVIYVKFHLESEHIPLDESTDRVHHCATCKKNYMTFEQLTNHMKLHSEKIWSCPECKKQFRRLDKYKDHQKIHQNDRTFLCAHCGKDFPTTKYMNRHLQTHMKEKVQKPDEEFECEVCGKKMKYKSNYTNHMKTHGPEHSKQIKADPDSPPKKIYLCSICGRNCGSSSNLTVHMRRHNGQAICSCSVCGKGYPRKADLVMHMRRHTGEKPYECPTCGRGFARRDKLRIHIRTHTGEKPYACPCGRAYAQKNDLKTHQKRNTCGQNFDITKLMAPYQPSICVRPQHAPQAAPKRELPPPPVPVSASTAGPSVSQSYHNTNPTYSVAQPMTSGMVSGIDSGHSIPPSPHHDLSRMSDSVPNSPVDLMTHRHQFGAFPGHMVPGFPNPYQQPKVDMCNQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01525153; iTF_00949048;
90% Identity: -
80% Identity: -