Mgen019461.1
Basic Information
- Insect
- Malaya genurostris
- Gene Symbol
- -
- Assembly
- GCA_030247185.2
- Location
- CM058072.1:211150266-211154222[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0059 0.47 12.2 3.3 3 23 206 227 205 227 0.98 2 13 0.00048 0.038 15.7 0.5 2 23 240 261 240 261 0.96 3 13 0.0022 0.18 13.6 0.2 2 23 267 288 266 288 0.97 4 13 0.00024 0.019 16.6 3.5 1 23 294 316 294 316 0.99 5 13 0.13 10 8.0 0.3 3 23 374 395 373 395 0.86 6 13 0.052 4.1 9.3 5.9 1 23 406 428 406 428 0.96 7 13 5.1e-05 0.004 18.7 1.4 2 23 434 455 433 455 0.97 8 13 0.0003 0.024 16.3 2.4 1 23 461 483 461 483 0.95 9 13 1.6e-05 0.0012 20.3 2.3 1 23 495 517 495 517 0.98 10 13 5.9e-06 0.00046 21.7 1.7 1 23 537 559 537 559 0.96 11 13 8.9e-06 0.0007 21.1 0.8 2 23 566 587 565 587 0.96 12 13 1e-06 7.9e-05 24.1 0.3 1 23 593 615 593 615 0.99 13 13 0.046 3.6 9.4 0.1 6 22 625 641 625 641 0.95
Sequence Information
- Coding Sequence
- ATGGATTATAAACCGAACTTTATTTGCTTCGATCAGGTGTGTAGAATTTGTATGAAGAGCAGTGATGGTTTGCAGTCCATCTTTGGTCATCCGCAAGACATTCCCGAACTGGTTAAATTACTTTCGAAAGTAGAGGTACTTGAAAGTGATGACTTGCCAAAACAAATTTGTCCTGAGTGTATGTCTTACGCAGGCAATATAGTGGAGTTCAAAGAACGGTGCCTACAATCGGAccgaacgttgagagaatatatTTCCGATGGTTGCGAAGATCACAAACAGAACTTTCTGAAGCAGGAAGCAGGGCTGCTTGGAGATGATAGCGAAGGCTTACCATTGGGTCCAGAATTTATCAAATGTGAAATCGATGAATCAGCCAGTGACAAGTCCGATGAAGGAGGTAACGATTTTGAAATTGTCGATGATAACGATACCGATAGTGGCGAAGACGAGGACAACGATGATGATGAAGATCCCGgtgatgaaaattattatgatgaTGAGAAAGACAAGATTAATCGACGCATTCGAAGGCGCCGAACTCGTAAAGCCAACGTGGATGACTCTGATGATGAGCCGTTGattgcgaaaaagttaaaaGCTGAAACTCACGGTTGTACGATATGCAAGGAAAGGTTTACAAATAAATCGCACATTAAGTTTCACATGAGAAGCGATCATGCGGACGACAAAACCGCTACGGAAGACAAAATTAGACGGTGCTTCTATTGTCCAAAGGCCTACTCAAACTATGAACTTCTGAAAATTCATCTCAACTTTCACCCTCGGAATGAGTGGGTCTGTCCAATGTGTGGAAAAGAGATGAAGAAAAAAggaaaattcattgatcatttGAGGATGCATGCGAACGAACGGCACTACAAGTGTGATATCTGCGAGAAGGATTTCACCTCGCACAAGTACATTTCTAATCACATGAAAATGCACAAAAAGAAAGGAGAAACGGAGAACAAAGGCAAATCAGATGATTCTAGCGATAGCGAATATGATCCAGCAGAAGATGAAAAAGAAGACGAAGACGATGAAGATATCAATTTATCAGATAAGGACGAAAAAGTCAAGAGCTCATATCAATTGAACCCCGACGCTCCTAAGGATTGTCCGGTGTGTGGTGAAACGTTTGAGAGGATGGTACACGTCAAATTTCATCTCGAGAGTGAGCATATTCCTCTGGATGAGTCCGTTGCAAGAGTTCACCACTGTGCGACTTGCAAGAAAAATTACATGACCTTTGAACAGCTGACAAATCACATGAAATTACACACGGAGAAAATCTGGAGCTGTCCGGAGTGCAAGAAACAATTCCGGCGATTGGATAAATACAAAGATCATcaaaaaattcatcaaaatgaTCGCACATTCCTATGTGCGCATTGTGGTAAAGATTTTCCTACGACAAAGTACATGAACCGGCATCTTCAAACTCATATGAAGGAGAAAGTTCAGAAGCCGGAAGAGGAGTTTGAGTGCGAAGTGTGCGGCAAGAAAATGAAATATAAATCCAATTACACCAATCATATGAAAACTCATGGACCGGAGCACTCGAAACAAATCAAGACGGATCCGGATTCCCCACCTAAGAAGATCTACCTATGCAGTATATGCGGACGAAACTGCGGATCTTCCAGCAATCTAACAGTCCATATGCGTCGTCATAACGGTCAAGCGATATGCTCCTGTTCGGTATGTGGCAAAGGATATCCACGGAAGGCAGATTTGGTTATGCACATGAGAAGGCATACAGGAGAAAAACCATACGAGTGTGCTACTTGTGGGCGTGGATTTGCTAGAAGAGACAAACTCAGAATTCACATCCGAACCCATACAGGAGAAAAACCTTACGCTTGTCCCTGTGGGCGCGCTTACGCTCAGAAAAATGATCTCAAGACGCATCAAAAGCGTAACACGTGTGGAcaaaattttgacattaccaaacTGATGGCGCCCTATCAGCCATCGATATGTGTTCGTCCTCAGGCTGCAGTCCAAGCCGCTCCGCAGAGGGAGCTACCACCGCCACCAGTGCCGGTTTCGTCGAGTGCGGTGGCTCATTCGGTTCCGCAATCGTACCATAATACCAGTGCCACCTACTCGGTTGCTCAATCGATGCCCAGTGGCAATGTGATTGCTAGCGGTATTGAAAGTGGCCACAGCATTCCACCGTCTCCGCATCACGATCTGAGCAGAATGTCTGACTCGGTGCCAAACAGTCCAGTTGATCTGATGACACATCGGCATCAGTTCGGAGCCTTCCCGGGCAACATGGTTCCGGGTTTCCCCAATCCCTACCAACAGCCTAAGGTTGACATGTGCAATCAGTGA
- Protein Sequence
- MDYKPNFICFDQVCRICMKSSDGLQSIFGHPQDIPELVKLLSKVEVLESDDLPKQICPECMSYAGNIVEFKERCLQSDRTLREYISDGCEDHKQNFLKQEAGLLGDDSEGLPLGPEFIKCEIDESASDKSDEGGNDFEIVDDNDTDSGEDEDNDDDEDPGDENYYDDEKDKINRRIRRRRTRKANVDDSDDEPLIAKKLKAETHGCTICKERFTNKSHIKFHMRSDHADDKTATEDKIRRCFYCPKAYSNYELLKIHLNFHPRNEWVCPMCGKEMKKKGKFIDHLRMHANERHYKCDICEKDFTSHKYISNHMKMHKKKGETENKGKSDDSSDSEYDPAEDEKEDEDDEDINLSDKDEKVKSSYQLNPDAPKDCPVCGETFERMVHVKFHLESEHIPLDESVARVHHCATCKKNYMTFEQLTNHMKLHTEKIWSCPECKKQFRRLDKYKDHQKIHQNDRTFLCAHCGKDFPTTKYMNRHLQTHMKEKVQKPEEEFECEVCGKKMKYKSNYTNHMKTHGPEHSKQIKTDPDSPPKKIYLCSICGRNCGSSSNLTVHMRRHNGQAICSCSVCGKGYPRKADLVMHMRRHTGEKPYECATCGRGFARRDKLRIHIRTHTGEKPYACPCGRAYAQKNDLKTHQKRNTCGQNFDITKLMAPYQPSICVRPQAAVQAAPQRELPPPPVPVSSSAVAHSVPQSYHNTSATYSVAQSMPSGNVIASGIESGHSIPPSPHHDLSRMSDSVPNSPVDLMTHRHQFGAFPGNMVPGFPNPYQQPKVDMCNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01462346;
- 90% Identity
- -
- 80% Identity
- -